Ictalurus furcatus (blue catfish): 128602056
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Entry
128602056 CDS
T09387
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128602056 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128602056 (cnot3a)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128602056 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128602056 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
128602056
NCBI-ProteinID:
XP_053471599
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All DBs
Position
1:3137837..3148733
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AA seq
899 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKSWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEELKKLIERHRYHI
RMLETILRMLDNDSVQVEAIHKIKDDVDYYIDSSQDPDFKENEFLYDDLDLEDIRKRCRR
RCFVEPFRDYLFKIFFFFKCIHHSISLSFRLHLAMLATSPQGHNDDEMSTPTSTTSSSPV
PPSPATATAEIPEEEKKRGRSTDGEVSQSPVKSSNPLSSFSSSCSSSSGFSSSSTSSLVS
MAAVVGGTASVSGGNTLLGSFSSAVQQHPHSKLSSSSSSSSSSSSSSSSSSSVTSSSTSS
PPSHPNLPSSTTPSALPSSNSQPLMSGGLNVGKVGTAVTSSSMPGNMAAAATVISSSMPT
PYAQAAAGSGPGGPTGNNSGTVSAVGGASVNTNSTPNANGTLPMSSNGGVLGLVPAQPTH
QGAVQLPISPSVGTVPGGGASMGAGNGGSTASSGGIMGNVAPARPPSVVKQNGGTNPLAY
SAVVADSSSDSSLSSASLSQSSQPSSTGSLANQTLDNGPTLLSSITLPPSSQSPSFSDSA
PGGGSLLNGPHSYTPGPDPIKAPEPLSSLKAMAERAALGSGLDGEIPPLHLTERDLFSAS
SSAPGPPVPPQPAVTEVNLPPTLGACPLGPSPLSKEQLYQQIMQEAAWGHMPLPSDSERI
RQYVMRTPCPLLPFHHHTPPHHCDSIDFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQ
SWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggccgataagagaaaactccaaggtgaaatagaccggtgtttgaaaaaagtggcagag
ggggtggaacagtttgaggacatttggcaaaagctccacaacgcagccaacgccaaccag
aaggagaaatacgaagctgacctcaagaaggagattaaaaagctccagagactccgagac
cagattaagtcatgggtggcgtccaacgagatcaaagacaaacggcagctagtggagaac
cggaagctcatcgagacgcaaatggagcgctttaaagtggtagagcgggagaccaagacc
aaggcgtactctaaagaaggactgggtttggctcagaaggtggatccggcgcagaaggag
aaggaggaaacggagcagtggctcacgaacaccatcgacacactgaacatgcaggtggac
cagttcgagagcgaggtggagtctctgtccgttcagaccaggaagaaaaaaggagacaag
gataagcaggatcgtatcgaggagctgaagaagctgattgagagacaccggtaccacatc
cgcatgctggagaccatcttaaggatgttagacaacgactcggtgcaggtggaggcgatc
cacaagataaaggacgacgtggactactacatcgactcctcgcaggatcccgactttaag
gagaatgagtttctgtacgacgacctcgacctcgaagacatccgtaagcgttgccggcgt
cgatgttttgtagaaccgtttcgggattatttatttaaaattttttttttttttaaatgt
atccaccattccatttctctctctttccgtctccatttagcgatgttggcgacatctccg
cagggacacaacgatgatgagatgagtactccgacctccacgacgtcgtcctctcctgta
ccgccgtctccggccacggctaccgcggagatcccagaagaggagaagaagagaggccga
tctactgacggcgaagtgagccagtcacctgtgaagagcagcaaccccctgtcgtctttc
tcctcctcttgctcctcctcctcaggcttttcgtcttcttccacctcctccctcgtttcc
atggcagctgttgttgggggaacggcgtcggtttccgggggcaacactctcctgggcagt
ttcagcagcgccgtccagcagcatccgcacagcaagctgtcctcatcttcgtcgtcgtcg
tcatcttcctcctcctcttcctcctcctcctcctcagtgacgtccagcagcacgtccagc
ccacccagccaccctaacttgccctcgtccaccaccccgtcagctcttccctcttctaac
tctcagccgctgatgtcaggagggcttaacgtgggcaaagtgggcacggctgtgaccagc
agcagtatgccgggcaacatggctgccgccgccaccgtgatttcgagctcgatgcccact
ccttatgcccaggcggcagccggaagcggcccgggcggacccacgggaaataacagcggc
accgtttcagcggtgggcggagcaagcgttaacactaattccacgccgaacgctaacggg
acgcttccgatgagctccaacgggggcgttttaggcctcgtaccagcgcagccgacgcac
cagggagcagtacagttacccatcagcccatcggtgggcacggtgccagggggcggagcc
agcatgggcgctggaaacgggggcagtacagcgtcatcagggggcatcatgggtaacgtg
gcacctgcccgaccgcccagtgtggtgaaacaaaatggaggaacaaatcctctagcgtac
agtgcggtggtggccgacagcagctcggactcctccctcagcagtgccagcctatcacag
agcagccagccctcttccaccggctccttggccaatcaaactctggataacgggccgacc
ctgctgagctccatcactctgcctccctcctctcaatctccgtcgttttcagacagcgcc
cccggtggtgggagtttgctgaacggcccgcactcctacacacctggcccagaccccata
aaggctcctgagcctctgagctctctgaaggcgatggctgagcgagcagctctaggttct
ggactggatggagaaatcccaccacttcatctgacagaacgagatttgttttcggcatcc
tcctccgcccctggcccaccggttcccccccagcctgctgtgacggaggtgaatcttcct
cctactctgggggcgtgtcctctaggcccctcccctctcagtaaagagcagctgtatcag
cagatcatgcaggaggcagcctgggggcacatgcccctcccgtcagactcggaaaggatc
aggcaatacgtgatgaggactccgtgccctcttttacctttccaccatcacactcctcct
catcactgcgactccattgacttctaccagagactctccaccgagaccctgtttttcatc
ttctactacctggagggcacgaaggctcagtatctctcagcgaaagccctgaagaagcag
tcttggagattccacactaaatacatgatgtggttccagagacacgaggaacccaagacc
atcaccgacgagttcgaacagggaacttacatttactttgactatgaaaaatggggccag
agaaagaaggagggcttcacgttcgagtacagatacctggaggaccgagacctgcagtga
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