Ictalurus furcatus (blue catfish): 128602469
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Entry
128602469 CDS
T09387
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128602469 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128602469 (parn)
Enzymes [BR:
ifu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128602469 (parn)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128602469 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
Motif
Other DBs
NCBI-GeneID:
128602469
NCBI-ProteinID:
XP_053472268
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All DBs
Position
26:19940444..19948806
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AA seq
656 aa
AA seq
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MEVTRQSFKDTLSVVYSAVQEADFLAIDGEFSGLSDGPAVSMLTNGMDTPEERYSKLRKH
SMDFLLFQFGLCTFRYDQSQSRYFTKAFNFYIFPKPFSRASPDIKFICQSSSIDFLASQG
FDFNKVFRNGIPYLNQGEESQLREQYEERRNQSNGVGTPSYISPTSCKGPMNIPEEHKDF
INRVVEKVEALLNNSEKTVDLEPCSGFQRKLIYQTLNWKFPKGLHIETVENDKKERFIQI
SKVDEEERKRIEQQKHEREQEELNDAVGFSRVIHTISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEELDDFKEVTMCVFPRLLDTKLMASTQPFKELITNTSLAELEKQLKEKPFKAPRVA
CSEGFQSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLTPPRAHISARSKLIEPFYNK
LFLMRVADIPYLNISGPDLQPKRDNVLYVTFPKEWKTSDLYQLFSAFGNIQVSWVDDTSA
FVSLSQLEQVQIAVNTSQYAESYRIQTYAEYMQSKQKNTHTHRKWGEDGWAEPPYRAVAM
TAASAVHDRSSLRGKRSNSPTQDHQSSDFSAAADSNWSNYGNIKRIKKDGARSADSSFTD
AADAKTTNDWLRTTPEGGGASSTPEKEEAESEDAWPQSSANQNQGSSSLFDVPQVW
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaacacggcaaagttttaaagacaccctgagcgttgtttacagcgctgtgcag
gaggccgacttcctggccatcgatggagaattttcaggtctgagcgacgggccggcggtg
agcatgctgaccaacggtatggacactccggaggaacgttacagcaaactcaggaagcac
tcgatggacttcctgctctttcaattcggcctctgtaccttcagatacgaccaatcacag
tccaggtacttcacaaaagcttttaacttttatattttccccaaaccgttcagcagagca
tcgcccgatatcaaattcatctgtcagagctccagtattgacttcctggccagtcagggc
ttcgacttcaacaaggtgttccgtaacgggatcccgtacctgaaccagggggaggagtct
cagttgagggagcagtatgaggagaggcggaaccaaagcaatggggtgggaactccctcc
tacatctcacccacttcctgtaagggaccgatgaacattcctgaagagcacaaggacttc
atcaacagagtcgtggagaaagtggaagcgcttctgaacaactctgagaagactgtggat
ttggagccgtgctctgggtttcagaggaagctcatctaccagaccctcaactggaagttt
cccaaaggacttcatattgaaactgtggagaatgacaagaaggaacgtttcatccagatc
agtaaggtggatgaagaagagaggaagaggattgaacagcagaaacatgaacgggagcag
gaggaactgaacgatgcggttggcttctccagagtcatacacaccatttctaaatcgggt
aaattggtggttggtcacaacatgctgctggacgtcatgcacaccatccaccagttctac
tgccccctgcctgaggagctggacgacttcaaagaggtgaccatgtgtgtgtttccccga
cttttagatacaaagctgatggcatcaacacagcctttcaaggagctgattacgaacaca
tctctggcagagctggagaagcagctaaaggagaagcctttcaaagctcccagagtcgca
tgttctgagggatttcagagttatgacactgcatctgagcaactgcatgaagctggctat
gatgcttacatcacgggactctgcttcatctccatggccaactacctaggttcattccta
acacctccaagagctcacatctccgctcgctccaaactcatcgagcccttctacaacaag
ttgttccttatgagggtggccgatattccttacctgaacattagtggaccagacttgcag
ccgaagcgggacaacgttctgtacgtcaccttccctaaagagtggaaaaccagtgacttg
taccagctgttcagcgccttcggaaacatccaggtgtcttgggtggacgatacatcggcg
ttcgtgtctctcagccagctggagcaggtgcagatcgcggtgaacacgagtcagtacgca
gagagttaccgcatccagacgtacgcagagtacatgcagtccaaacagaagaacactcac
acgcacaggaagtggggggaggatgggtgggcagagcctccctaccgtgctgttgccatg
actgcagcttctgcagtacatgacaggagttctctgagagggaagaggagcaacagcccc
actcaggaccatcagagctccgacttcagcgccgccgccgatagcaactggagtaactac
ggcaacataaagaggataaaaaaagatggtgctaggagtgctgactcatcattcaccgac
gccgcagacgccaagacgacgaacgactggctcaggaccacgcctgaagggggcggggca
tcttcaaccccagaaaaggaagaagctgagtcagaagatgcgtggcctcagtcttcagcc
aatcagaatcaggggtcatccagtctgtttgacgtccctcaagtttggtag
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