Ictalurus furcatus (blue catfish): 128602816
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Entry
128602816 CDS
T09387
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128602816 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128602816 (ddx42)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128602816 (ddx42)
Spliceosome [BR:
ifu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128602816 (ddx42)
Complex B
128602816 (ddx42)
Complex C
U2 SnRNP specific factors
128602816 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
128602816
NCBI-ProteinID:
XP_053472854
LinkDB
All DBs
Position
2:35446408..35458657
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AA seq
904 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLSAGKKEEPRLNQQPHGAFGSVGAAGGYGKNQQLPAFYKI
GTKRANFDEENAYFEDDEEESSTADLPYIPAENSPTRQQMQSGGGSGGGGGGGGGSDSDD
DPLDAFMAEVENQAAKDMKKLEEKEKEKKLTKGIRDDIEEEDEQEAYFRYMAENPTAGLI
QEEEEENVDYDSDGNPIPPTTKKIILPLPPIDHSEIDYPPFEKNFYNEHEELNSLTGAQV
VELRHKLNLRVSGAAPPKPCTSFAHFGFDEQLMNQIRKSEYTQPTPIQCQGVPIALSGRD
IIGIAKTGSGKTAAFIWPMLVHIMDQKDLEQGEGPIAVIVCPTRELCQQIHAECKRFGKA
YGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRM
FDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDVT
QLVELLPSGSDKWPWLTRRLVEFTSAGSVLIFVTKKANCEELATNLQQEGYSLGLLHGDM
DQSERNKVISDFKKKSLPVLVATDVAARGLDIPSIRTVINYDIARDIDTHTHRIGRTGRA
GEKGVAYTLLTNKDTSFAGDLVRNLEGANQSVPKGLMDLAMQNPWFRKSRFKSGKGKRLN
VGGGGLGYRERPGLGSDSSERSTGSALGNYESYKPPTGAMGDRMAAMKQAFQAQYKNHFV
AASGISPKLSAQSNSTSGWTSAGSLSSVPSGAPEGSRTPSSSSPMPPPPPAFSLGTKLAG
FSSAVSDSYSSSSSSSSSSSSSSREDSRHDRSRHGDSHHRHSDRDRYGDRDRHGDRDRDR
DRHSDSRNGDGGRRERDSWKGEREGGERAGGERAGGERASSHRGGEDSFAVPDPPKRKKS
RWDS
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggaggaccgagtggtaaacgaggctttggctttggagggttttct
ctctccgcgggtaaaaaagaggagcctcggctgaaccagcagccccacggcgcgtttgga
agcgtaggagccgcaggaggttacggcaaaaaccagcagctgcctgcgttctacaagatc
ggaaccaaacgcgccaatttcgacgaggaaaatgcctattttgaggatgatgaggaggaa
tcgagcacggccgatctgccttatatcccggcggagaactctcccaccaggcagcagatg
caatctggaggaggaagtggaggaggtggaggaggtggaggaggatcagacagtgatgac
gaccccctcgatgcctttatggctgaggtggagaaccaagcagccaaggacatgaagaaa
ctggaggaaaaggaaaaagagaaaaagctgaccaagggtattcgagatgacattgaagag
gaagatgagcaagaggcttatttccgttacatggcggagaacccgacagccgggctgatc
caggaggaagaggaggagaacgtggactatgacagtgacgggaaccccatccctcctacc
actaaaaagatcatcttgccacttcctcctattgatcactctgagatcgactaccctcct
ttcgagaagaacttctacaatgagcatgaagagctcaacagcttgactggagcacaagtg
gtggagctgagacacaaactcaacctgagggtgtccggcgccgctcctcctaagccctgc
actagtttcgctcattttggctttgacgagcagctgatgaaccagatccgcaagtccgag
tacactcagcctacgcccatccagtgccagggtgtccccatagccctgagcggtagagac
atcatcggcatcgccaaaacgggtagcggcaagacggccgccttcatctggccgatgctg
gtgcacatcatggaccagaaggacctggagcagggagagggacccatcgctgtgatcgtc
tgccccaccagagagctctgccagcagatccacgcagagtgtaagcgcttcgggaaggcc
tacggcctgcgctcggtggctgtgtacggagggggcagcatgtgggaacaggccaaggct
ctacaggaaggggctgagattgttgtttgcactccgggtcgcctgatagatcacgtgaag
aagaaggcgacgtccctgcagagagtgacctacctggtgtttgatgaggctgatcgtatg
tttgatatgggctttgagtatcaggtgagatccatcgccagccacgtaaggccagacaga
cagactctgctgttcagtgccacgttcaggaagaagattgagaagttggcacgggacatt
ctcgttgacccgatccgtgtagtgcagggagacattggagaggcgaatgaagacgtgaca
cagctggtggagttgttgccgagtggctcggataagtggccgtggctgacacggagactg
gtggagttcacctcagctggctccgtgctcattttcgtgactaagaaggccaactgtgag
gagctggccaccaacctgcagcaggagggctacagcctgggactgcttcatggagacatg
gaccagagcgagaggaacaaagtcatcagtgacttcaagaagaagagcttgcctgtcctg
gtagccactgatgtcgcagctcgtggattggacattccttcaatccgtactgtcataaac
tatgatattgcccgagacatcgacacacacacgcatcgcattggccggacaggtcgcgct
ggagagaagggcgtggcctataccctgctcacaaacaaagacacctcattcgccggcgac
cttgttcgtaatttagagggagcgaatcagagtgtcccgaagggtctgatggatttggcc
atgcagaatccctggttcagaaagtcccgttttaagagtggaaagggaaagaggctgaat
gtcggaggtgggggtctcggctacagggagagaccgggccttggatccgattcctcagag
cgcagtactggttctgcccttggcaactacgagtcctacaaaccccccactggagctatg
ggagatcgcatggctgccatgaagcaagcctttcaggctcagtacaagaaccactttgtg
gcagcatcaggtatctctcccaagctcagcgcccagtcgaacagcacatcaggttggaca
agtgcaggcagtctgagttctgtgccgtctggagcccctgaaggaagccgtacgccctca
tcttcctcccccatgccccctcctcctccagccttcagtttgggtactaagctggccggc
ttcagcagcgccgtgtcagactcttactcctcctcctcctcctcctcctcttcctcttct
tcctcgtccagagaggattcccgccatgacaggagccgccatggagacagccaccatcgc
cacagcgacagggatcggtatggtgacagggatcgccatggggatcgtgacagggaccga
gatcgtcacagcgacagccgtaacggcgatggtggtcgccgggagagggacagttggaag
ggagaaagggagggcggggaaagggcgggcggggaaagggcgggcggggaaagggcaagc
tcacacagaggaggtgaggacagctttgctgttccggatccaccaaaacggaagaagagc
aggtgggacagttag
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