Ictalurus furcatus (blue catfish): 128603365
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Entry
128603365 CDS
T09387
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128603365
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128603365
Spliceosome [BR:
ifu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128603365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
Ank_2
AAA_19
HA2_N
Ank
AAA_22
nSTAND3
ATPase
PhoH
ABC_tran
SRP54
ResIII
UvrD-helicase
AAA_16
AAA_7
AAA_30
FtsK_SpoIIIE
Ank_4
AAA_29
NACHT
AAA_23
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
128603365
NCBI-ProteinID:
XP_053473704
LinkDB
All DBs
Position
28:complement(17281690..17297962)
Genome browser
AA seq
1425 aa
AA seq
DB search
MSRSNATSQKPNMNPSKQSGSKKARGLKDIRIDEEVKIAVNIALEKFQYSDQREMEFPSS
LTSTERAFIHHLAQSLGYISKSKGKGIHRFLTIWKKDRPEAAQSIMTFNLTHNSKHVVQN
LLQRFPITSKERADLLQRTERGLAVSPEAADNGRDKNRTSGRLSNGIPQVPQRRGPSELE
CFRRTLPVYERQEEIVATIEENQVVLIVGETGSGKTTQIPQFLMDACSQKGNPCRIFCTQ
PRRLAAIAVAERVAAERGERVGQAIGYQIRLESRVSPRTLLTFCTSGVLLRTLMAGDAVL
SSVTHIIVDEVHERDGLTDFLLTKLRDVLQKMPSLKLILSSAALDVDLFTRYFGPCPIIY
IKGRPYDVKALFLEDILRTTGYTNKEMAKYKAEMQKEAKQQTSLIEWCEVKVGVSPPECR
KNRQSASVPQEADLLDSGGDSVFSQMSEKDVTSLEPWLLKEMDACISSIFLQQDADAFVQ
LFNLIVNENISVDYRHSETSATPLMVAAGRGFISQMEQLLSMGANVHVKASNGWTALDWA
KHFNQTEAVDLLESHISSVEAGQLDESSLVQSASGELSAQDKELLKAYHHSFDDEKVDLD
LIMHLLFNICQSSDEGAVLIFLPGYDEIVGLRDRILFDDKRFADHQHRYQVFMLHSNMQT
SDQRKVLKPAPGGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKAFDALNHVTMLKMVW
ISKASALQRKGRAGRCRPGICFHLFSRLRFNNMLEFQVPQLLRMPLQELCLHTKILAPIT
CSIAEFLSKAPEPPHLLTVKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKMVLC
AVVLKCLDPILTIACMLSYREPFVLPAQASQKRAAMLCRRCFAANTFSDHMALLRAFQAW
QKARSDGWERSFCEKNFLSQATMEIIIKMRTQLLGQLRAIGFVRARGCSDIRDVNQNSEN
WAVVKAALVAGMYPKLICVDRDNQTLRGAKEKKVRFHPTSILSQPQYKKIPPANSQAAAV
QALPTDWLIYDEMTRAHWIASVRCCTAVTPLTVAVFGGVAKLPSTALQEPSTPRVVDDAL
CESSDSDSEARSTDQLAQVKIDEWLNFKLDQEMASMVFQLRQRWHSLFLRRIRCPSKPWS
ELDEATIRAVVSVLSSEEHATGLQQPTGIGQRPKPLTPDEHQHQSNSWRSGQRCFTEQSY
EAPTPDRSPKVPSAVSQFKSQRDKGVVFSKRSADDHLPVKSDSPSLTGPRTSPSSTSSTK
GPAVLMSPLPGVSQSPSLRPRPSVRYFIMKSSNLRNIELSQQRGIWSTTPNNEHKLNRAF
QETGAIFLIFSVQGSGHFQGYARMTSEIGSKRCKDWGATGLGGVFSVEWIRKESLPFQVT
HQLLNPWNDNKKVQISRDGQELEPQAGAQLLQLWDRFLNKRQHEL
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggtcgaacgccacctctcagaaaccgaacatgaatccatcgaagcagtctggt
tcaaaaaaagccagagggctgaaagacatcaggatcgatgaagaggttaaaattgcagtg
aacattgcgctggagaaattccagtacagcgaccagagagagatggagtttccttcttca
ctgaccagcacagagagagcgttcatacatcaccttgcacaatccctgggttacatttca
aaaagtaaaggtaaaggaatacaccgcttcctcacgatatggaagaaggaccgtccagag
gcagcgcagtccattatgacctttaacctcacccacaattccaagcacgtggtccaaaac
ctgctgcagaggttccctataactagtaaagagcgcgctgatctgctccaacgcactgag
agagggctcgctgtttctccagaagctgctgataatggacgagacaagaacaggacgagc
gggcggctgagtaatggcatccctcaggtccctcagaggagaggtccgtctgagctggag
tgttttcggagaacgctgcctgtgtacgagcggcaggaggagatcgtggcgaccatcgag
gagaaccaggtggtgctgatcgtgggtgaaacgggttcagggaaaaccacccagattcct
cagttcctgatggacgcctgcagccagaaaggaaatccctgccggatcttctgtacgcag
cccaggaggctggcagccatcgctgtggcggagagagtggcggccgagagaggagagcgc
gtcggccaggccatcggctaccagatccgcctggagagcagagtttctcccaggacctta
ctgaccttttgcacgagtggcgtgctgctcagaacgctcatggctggagacgccgtcctc
tccagtgtcacacacatcattgtggacgaggtccatgagcgggacggcctgacggatttc
ctcctcaccaagctgcgggacgtgctgcagaagatgccttctctgaagctcattctctct
agtgctgccctggatgtggatcttttcaccagatactttggcccttgcccgattatttac
atcaaaggacggccgtacgacgtcaaagcgctttttctggaggacattttgcggaccact
ggctacacaaacaaggagatggccaaatataaagcagagatgcaaaaagaagcaaagcag
cagacgtctcttatagagtggtgcgaagtgaaagtgggcgtatccccgccagagtgtcgg
aagaaccggcagtccgccagcgtcccgcaggaggctgacctgctggacagcggaggggac
agtgtcttcagccagatgagtgagaaagacgtgacctcgctggaaccatggctgctgaag
gaaatggacgcttgcatctcgagcatctttctgcagcaggatgctgatgcctttgtgcag
ctttttaacctgattgtcaacgagaacatcagtgtggactacaggcacagcgaaacgagc
gccacgcccctgatggtggctgcagggagaggcttcatcagccagatggagcagctcctc
agcatgggggccaacgtgcatgttaaagcttctaatggctggaccgctcttgactgggcc
aaacacttcaaccagactgaagcagtagatctgctagagtcacacatctcgtctgtggag
gcaggtcagctggacgagtcgtccctggtgcagtcagccagcggagagctcagcgctcag
gacaaggagctgctcaaggcttaccaccacagctttgatgatgagaaggtggacctggac
ctcatcatgcacctgctcttcaacatctgtcagagctctgatgaaggtgcagtcttgata
tttctgccaggatacgatgagatagttggactgcgagaccgcattcttttcgacgataaa
agatttgcagatcatcagcataggtaccaggtgttcatgctgcactccaacatgcagacc
tcggatcagaggaaagttctgaaaccagctccgggcggggttcgcaaaattattctctca
accaacattgctgaaacgagcatcaccgtcaacgatgttgtctttgtaattgactctggc
aaggttaaagagaaagctttcgatgccctgaatcatgtgaccatgctaaagatggtgtgg
atatcgaaagcaagcgcactacagcgtaaaggaagagctggacggtgcaggccgggaatc
tgtttccatctgttcagccggctgcgcttcaataacatgctggagtttcaggttcctcag
ctgctgcgtatgcctctgcaggaactctgtcttcacactaaaattttggcacccattacc
tgctccatcgcagagttcctttccaaagccccggagccaccacacctgctcactgtgaag
aacgctgtacagatgctcaagaccatagatgccatggacccttgggaggacctgaccgag
ctgggctaccacctggccgacctgcccgtggagccacacctgggcaagatggtgctatgt
gcagtagtgctcaagtgcctggacccgatcctcaccatcgcctgcatgctgtcctacagg
gaaccgtttgtactaccggctcaggcttcacaaaaacgagccgccatgctgtgcaggaga
tgcttcgctgcgaacaccttcagcgatcacatggccttgctccgggcttttcaggcatgg
cagaaggcccgcagtgacggctgggagaggtctttctgtgagaagaacttcctgtcacag
gccaccatggaaatcatcatcaagatgcgcacccagttgctgggccagctccgtgccata
ggttttgttcgcgctcggggttgcagcgacatccgtgacgtcaatcagaactccgagaac
tgggcggtggtgaaggcggcgctcgttgcaggaatgtacccaaagctgatctgcgtagac
cgcgacaaccaaacactccgaggcgccaaagagaagaaggttcgcttccaccctacgtcc
atcctgagccaaccccaatacaagaagatccctccagctaacagccaagcagcagcagtt
caggctctgcctacagactggttgatctatgacgagatgacacgagctcactggatagcc
agcgtgcgctgctgcactgcggtcactccgctcaccgtggctgtgtttggaggggttgcc
aaactgcccagcacggcgcttcaggaaccttccacaccccgagtagtagacgatgctctg
tgtgagagcagtgacagcgacagtgaggctcgctccacagatcagctggctcaggtgaag
atcgacgagtggcttaacttcaaattggatcaagagatggcgtccatggtgttccagctg
aggcagcgttggcatagcctgttcttgaggaggatccgttgcccctctaagccctggtcc
gagctggacgaggcgacgatccgggccgtggtgtctgtgctgagctccgaagagcatgcg
accggcctgcagcagcccacgggtatcggccagagaccaaaacccttaactccagatgag
catcagcatcagtcaaacagctggaggagcggacagaggtgtttcacggaacagagctac
gaggctcccacaccagacaggtctccaaaagtgccatccgctgtctctcagtttaagagc
caaagagataaaggtgtcgttttttccaaacgttcagctgatgatcatctcccggtaaag
tcagacagccccagcttaaccggtcccaggaccagtccctcgtccacttcctcaacaaaa
ggaccggccgttcttatgtcacctttacctggggtttcccagtcgccatcgctgagaccc
agaccgtcagtgcgttacttcatcatgaagagcagcaacctgaggaacatcgagctctcc
cagcagaggggcatctggtccactacgccaaacaacgagcacaaactgaaccgagccttc
caggagaccggcgccatcttccttatcttctccgtgcaaggctccggacacttccagggc
tatgctcggatgacttcggagatcgggtccaagcgctgtaaggactggggtgctaccggt
ctgggaggagtcttcagcgtggaatggatccgtaaagagagcctccctttccaagtcact
caccaactcctcaacccctggaacgacaacaagaaagtgcagatcagccgggacggacag
gagctggagcctcaggctggagcacagctgttgcaactctgggatcgcttcctcaacaaa
cggcagcacgagctgtga
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integrated database retrieval system
