Ictalurus furcatus (blue catfish): 128603756
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Entry
128603756 CDS
T09387
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
128603756 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128603756 (lig3)
Enzymes [BR:
ifu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128603756 (lig3)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
128603756 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
128603756
NCBI-ProteinID:
XP_053474393
LinkDB
All DBs
Position
28:4900179..4908853
Genome browser
AA seq
1000 aa
AA seq
DB search
MHGLGFCKAARTLCRTSRLCQTQSTCPLLLQYCCPLIHAWGFALSARPPSRRFGLSSQAF
LAVSRATWQDERTTMAEQRFCVEYAKRGQAGCKKCKERIMKGLVRIGKIVPNPFSESAGE
MKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEEKELINKLVAELAAKANASPK
KKVQAKLNTSGQLSAPPADPTVNAPRKFSGFTATKAGPSSSSPGPSPAKASQGSTLSTQF
CQPDHKDCLFREFRKLCAMVAEKSSYNAKTEIIKDFLKKGSAGDKFKGDLYLTVKLLLPG
VVKSVYNLNDKQIVKLFSRILNCNQDEMVRDLTQGDVSETVRMFFEASNSFPPSTKSLLT
IQEVDASLTRLAQLTKEDEQQAELEDIAKKCTGNDLKCYIRLVKHDLKINSGAKHVLDAL
DPNAYDAFKASRNLGDVIDRVLRNQQEASNGGGPRKHLSVEATLMTPVQPMLAEACKSIE
YAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFARGQ
SMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVCLFVFDCVYFNGVSLMDKPLCER
RKFLHDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKDVKGAYEPGKRHW
LKVKKDYLNEGAMADTADLVVLGAFFGTGSKGGIMSSFLMGCYDPTTKKWCTVTKCSGGY
DDATLARLQKELDVIKIGKDPSKIPPWLKIVKNYYPDFLIRDPEKAPVWEITGAEFSKSE
MHTADGISIRFPRCTRMRDDKDWKTATNLPQLKELYRVSKERCDFEVTARPSTSSKDDKG
SSGGDSGGSSPSTSNGAASSKLAKNGHTPKRKPAKPVTPSSAKRKLPTEEHCAKKIKVET
FHGNGQSKATASPAKAADPQPEKTLLNIFTGVKLHLPESVQEFEKLRRYFVAYDGDLVPD
YDAASATHTLAEPEEGSQAQKVSSNWIWQCVRKRRVVPPC
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggctcggcttttgcaaggcagcaagaaccctctgcaggacttcccgtctgtgc
cagacacaaagcacgtgtccgctcctcctgcagtactgttgccctctgatccacgcttgg
ggctttgccttgtcagcgagaccgccgtcgagacgcttcggtctctcatctcaggctttc
cttgccgtctctcgggccacgtggcaggacgagcggacgaccatggctgagcagagattc
tgtgtggagtatgccaagcgaggccaggcaggctgcaaaaaatgcaaggagaggatcatg
aaggggctggtgcgcatcgggaagattgtgcccaacccgttcagcgagtctgcaggagag
atgaaggagtggtatcacgtcaagtgcatcttcgaaaagctggagcgtgcgcgggccacc
accaagaagatcgaggacattactgacctggagggctgggaagaattgcaggatgaggaa
aaagagctgatcaataagcttgttgcagaactggctgctaaggctaacgcaagtccaaag
aagaaggtgcaggccaagttaaacaccagcggccagttatcagctcctcctgctgatccg
acggtgaacgcgccacgcaagttttccggcttcacagcaacaaaggcaggtccatcttcg
tcgagtccagggccatcacccgcaaaagcgtctcagggcagcacgctgtccactcagttt
tgccagccggaccacaaggactgtctgttccgcgagttccgcaagctctgcgccatggtg
gccgagaagtccagctacaatgcaaagacagagatcatcaaggacttcctaaagaagggt
tctgctggagacaagtttaaaggagatctctacctgacagtgaagctgctcctcccaggc
gtagtgaaaagcgtttacaacctcaacgacaagcaaattgtcaaactcttcagccgcatc
ctgaactgcaaccaggacgagatggtgcgcgacctaacacagggagacgtgtccgagacg
gtgaggatgttttttgaagccagcaactcgtttcctccttcaaccaagagtttgctgacc
atccaggaagtggacgcttcgctaactcgcctggctcagctcactaaggaagacgagcag
caggcagaactggaggacatcgcgaaaaaatgcactgggaacgacttgaagtgttacatc
cgtctggtgaaacatgatctgaagattaattccggtgccaaacacgtcctggatgcttta
gaccccaacgcctacgacgccttcaaagcctctcgaaacctcggcgacgtgatcgacaga
gtcctgcgcaatcagcaggaggcatcgaacggcggcggcccgaggaagcacttgagtgtc
gaggccacacttatgacccccgtgcagcccatgctggccgaagcctgcaagtccatcgag
tacgccatgaagaagtgccccaacggaatgtactctgagatcaagtacgacggcgagcgc
gtgcaagtgcacaagaacggtgaccacttcagctacttcagccgcagcctcaaacccgtg
ctgcctcacaaggtggcccattttaaagacttcataccgcaggcttttgccagaggccag
agcatgatcctagacgctgaggttcttctgattgataccaagaccagtaagcctctgccg
ttcgggacgctgggagttcacaaaaaagcggcgtttcaagacgcacaagtgtgcctgttt
gtttttgactgcgtttattttaacggtgtcagcctcatggacaagccgctttgtgagaga
agaaaatttcttcatgataacatggtggaggttccgaacaggattctgttttcggagatg
aagcacgtcacgagagctgctgacctggcggaaatgatcacgcgagtcatcagagaagga
ctggaaggactcgttctgaaagatgtcaagggggcgtatgaacctggtaaacgtcactgg
ctgaaggtgaagaaagattacctgaatgaaggtgcgatggcggacacggccgatttagtg
gtcctgggggcgtttttcggaaccggctcaaaaggtggaatcatgtccagtttcctcatg
ggctgctacgatcccacgacaaaaaaatggtgcacagtgacgaaatgctccggaggctat
gacgacgccacgctggccaggctgcagaaggagctggacgtcattaaaatcggcaaggat
cccagcaagattccaccctggctaaaaatagtcaagaactactatccagattttctcatc
cgagatcctgagaaagccccagtttgggagatcacaggagccgagttctccaagtcggaa
atgcacaccgctgacggcatctccatccgatttccgcgatgcactcgtatgcgtgatgat
aaggactggaagacggccaccaaccttccccagctcaaggaactttaccgcgtttcgaag
gagaggtgcgactttgaggtgaccgcaaggccgtctacaagcagcaaagacgacaaaggc
tcgtcaggaggagacagcggaggcagctcaccgtccacctccaatggagcagcaagctca
aagctagccaaaaatggtcatactccaaagcgaaagccggcgaaacccgtaactccatcc
tcagccaagaggaagctgcccactgaggaacactgcgcaaagaagattaaggtcgaaaca
tttcacggcaacgggcaaagcaaagcaaccgcttctccggctaaggctgctgacccgcag
cctgaaaagactctgctgaacatcttcaccggcgtaaaactgcacctcccagaatcggtg
caggagtttgagaagctgcggcgctactttgtggcgtacgatggcgatctcgttccggat
tacgacgctgcctctgcgacacacacgctagccgagcccgaggagggcagccaggcgcag
aaagtcagctccaactggatctggcagtgcgtaaggaaaagacgagtggttcctccctgc
tga
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