Ictalurus furcatus (blue catfish): 128603895
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Entry
128603895 CDS
T09387
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128603895 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128603895 (prpf4)
Spliceosome [BR:
ifu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
128603895 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_EML
WDR90_beta-prop_4th
PRP4
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_Vps41
WD_LRWD1
WD40_like
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR11_1st
Beta-prop_Nup120_160
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
128603895
NCBI-ProteinID:
XP_053474631
LinkDB
All DBs
Position
28:complement(16119941..16126175)
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AA seq
507 aa
AA seq
DB search
MSDEDEAPLVKKARIFYGSIEEKERERLARDGTISSEKDALKAGIEAGNINISSGESMEL
EERVSDRQAEVLAEFERRKRARQITVSTDDTEVKACLRALGEPITVFGEGPAERRERLRN
ILSVVGLDALKKSKKDEEKAKRSQEDSQQTWYHEGPDTLKEARIWLAKYSLPRAVKRLEA
AQAQREIPESTRTVRQQELHKTLRNLNNFCSQIGDDRPISTCQFSPNSKLLVTASWSGLC
KLWNIPDCSLVRTLRGHSTNVGAVSFHPQATLTLAESDVNMASCAADGSVKLWSLDSDEP
VADIEGHFMRVARVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFGRVWDLRTGRCVMFLEGHLKEVYAVNFSPNGFHVATGSGDNTCKVWD
LRKRRCIYTIPAHQNLVSSVKFQPTDGHFLLTGAYDNMAKVWTHPGWSPLKTLAGHEGKV
MGLDMSPDGQLIATCSYDRTFKLWVAD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaggacgaagcccctttggtgaaaaaagctcgaatcttctatggaagtatt
gaagaaaaggaaagggagcgtcttgctcgtgatggaaccatttcatcagagaaagatgct
cttaaggctggaattgaggctgggaatattaacatctccagtggtgagtccatggagctg
gaggagcgagtgagcgaccggcaggctgaggtactggctgaattcgagcgcagaaaaaga
gcccgacaaatcacagtctctaccgacgacaccgaagtcaaagcgtgcctgcgtgccctc
ggagagccgatcacggtgttcggcgagggccctgccgaaaggcgagagaggttgaggaat
attttgtcagtagtgggtctggatgctctgaagaaatcgaaaaaggatgaagagaaagcc
aaacgttcccaagaggattctcagcagacgtggtaccacgagggtcccgacacgctgaag
gaggcacgaatctggctggccaaatattcactgcccagagctgtgaagagactggaagct
gcacaggctcagagagagattcccgaatctacacgcaccgtacgacaacaagagcttcac
aagacgctcaggaacctgaataacttctgcagtcagatcggagacgatcgtccgatatcc
acctgccagttcagccccaactccaaactgttagtcaccgcatcatggagcggtctgtgc
aaactctggaacattccagactgtagtctcgtccgcacgttaagaggtcacagtaccaac
gttggagcagtcagcttccatccacaagccacgctcacgcttgccgagtcagatgtcaac
atggcctcttgtgctgccgacggatctgttaagctgtggagtttagacagtgatgagcct
gtcgcagacatcgagggacacttcatgagggtggctcgcgtagcgtggcatccttctggt
cgctttctgggcacgacatgctatgataactcatggcgtctgtgggatttggaggtccag
gaggagattcttcaccaggaaggccacagtaaaggcgtccatgacttgcatttccatcct
gacggctccttagcaggaactggtggtctggattcctttggtcgcgtgtgggacctgagg
accggtcgctgtgtcatgttcctggagggtcatctcaaagaggtttacgcagtcaacttc
tccccaaatggctttcacgtggctacggggagcggcgacaacacatgtaaagtgtgggac
ctgcggaagaggaggtgcatttacaccatccccgctcaccagaacctggtgtcctccgtc
aagttccagccgacagacggccatttcttgctaacgggtgcttatgacaacatggctaaa
gtgtggactcaccctggatggtctcctctgaagaccctggcaggacacgaaggcaaagtg
atgggactggacatgtctcctgatggacagctcattgcgacctgctcgtatgaccgcacc
ttcaaactctgggtggccgattga
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