Ictalurus furcatus (blue catfish): 128604172
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Entry
128604172 CDS
T09387
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128604172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128604172
03016 Transfer RNA biogenesis [BR:
ifu03016
]
128604172
Enzymes [BR:
ifu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
128604172
Messenger RNA biogenesis [BR:
ifu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
128604172
Transfer RNA biogenesis [BR:
ifu03016
]
Prokaryotic type
tRNA degradation factors
128604172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
OAF_N
KH-I_KHDC4-BBP
KH_KRR1_2nd
Motif
Other DBs
NCBI-GeneID:
128604172
NCBI-ProteinID:
XP_053475036
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All DBs
Position
29:14129667..14145804
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AA seq
765 aa
AA seq
DB search
MSRFLRLSCSLSRAARRSVWSSHSTERRVGVDLEGRKLEISTGKLARFADGCSVVQLGET
SVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRREISSSDVEILTSRLIDRSI
RPLFPAGYFYDTQVLCNILAVDGVNDPDVLAINGASAALAISDIPWNGPVGAVRVGLIDG
EFIVNPTRKEMSSSSLNLVIVGAPSSQVVMMEAAAENVLQQDFCHAVKLGVKHTQQIIHA
IQQLVREHKVVKRTPQKLFSAPPEMVEHTRQLAGEKIYGVFTDFSHDKISRDEAVNKIRL
DTEEQVKERFPQAEPFEVIEAFNVVSKDVFRNLVLTEYRRCDGRDLTSLRDISCEVDVFK
PLHGSALFQRGQTQVLCTVTFDSIESSVKADIITTALSGIKDKNFMLHYEFPPYATNEIG
KMGGLNRRELGHGALAEKALRPVIPKDFPFTIRVTSEVLESNGSSSMASACGGSLALMDA
GVPISSAVAGVAVGLISKPNPEKVSEIHDYRLLTDILGIEDYNGDMDFKMAGTNKGITAL
QADVKIPGLPLKIVMEAIQQATVAKREILGIMNKTLSKPRGSRKENGPVVENVRVPISRR
ARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPNAMHEAQEFITDICKDDQEQQLE
FGAVYTATITEIRDSGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALGLEVGQQIQVKYFG
RDPTDGRMRLSRKVLQSPAATVVKTLSERQSITMGTADGQTSASS
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggttcctgagactcagctgttcgctgtctcgcgctgctcggcggagtgtgtgg
tccagtcacagcacagagaggagagtcggagtggacttagagggaagaaaactggagatc
tcgacggggaagctggcgagatttgcggatggatgttctgttgtgcagctgggagagacg
tcagtgatggtcaccgccgtcagcaagaccaaaccttcaccctcacagttcatgcccctg
gtggtggattacagacagaaagcagcggccgctggacgaatccccaccaactacctgcgg
agagaaatcagcagcagcgatgtggagattctcaccagcagactgatcgaccgctccatc
aggccgctgtttcctgccggatatttctacgacacgcaggtcctgtgcaacattttagcc
gtcgacggcgtaaacgatcccgatgtcctcgccatcaacggagcgtctgccgctctcgcc
atctccgatattccctggaacggaccggtcggtgctgtgcgcgtcggcctgatcgacgga
gagttcatcgtgaacccgacgcggaaggagatgagctccagctcgctgaacctggtgata
gtaggagctccttccagccaagtggtgatgatggaagccgctgccgagaacgtcctccag
caggacttctgtcacgccgtcaaactgggagtgaaacacacgcagcagatcatccacgcc
atccagcagctggtccgagagcacaaggtggtgaagcgcacgccgcagaaactcttcagc
gccccgcccgagatggtggagcacacgcgccagctggctggtgagaagatctacggcgtg
tttacagacttttcacacgataagatctcgagagatgaagctgtgaacaaaatccgactc
gacacagaggagcaagttaaagagagatttcctcaagccgaaccgtttgaagtcatcgag
gccttcaacgtggtttccaaagacgttttccgtaacctggtgctgaccgagtacagaagg
tgtgacggacgagacttgacgtcattaagagacatttcgtgtgaagtggacgtctttaaa
cctctacacggctccgcgctgttccagagaggacaaacacaggtgctttgcactgtaact
ttcgactctatagagtccagcgtgaaagcggacatcataaccacggctctgagtgggatc
aaagacaagaatttcatgctccactatgagtttcctccctacgcgacgaatgaaatcggg
aaaatgggcggactgaacagacgagagctcggtcatggcgctctggctgaaaaagccctg
agaccggtcattcctaaagacttcccctttacaatccgagtgacctccgaggtgctggag
tccaacggctcgtcgtccatggcgtcagcgtgtggaggaagtctggctttaatggacgcg
ggtgtgccgatctcctctgcggtggccggagtggctgtgggtctcatttccaaacccaac
cctgagaaagtctccgaaatccacgactacagattactaaccgacattttagggatcgag
gactataatggagacatggactttaaaatggccggaacaaacaaaggcatcactgcgtta
caggctgatgttaagatcccaggacttcctctgaaaatcgtaatggaggccatccagcag
gcgacagtggccaagagagagattttagggatcatgaataaaaccctttccaagcccaga
ggttcgaggaaggagaacggccctgtagtggaaaacgtccgcgtgccgatttccagaaga
gctcgatttgttggtcctggaggatacaacctccgccgactgcaggcccaaacaggcgtg
actataagccaggtggacgaggagacgttctcggtgttcgctccgactcctaacgccatg
cacgaggctcaggagttcatcaccgacatctgcaaagacgaccaagaacagcagctcgag
ttcggggccgtgtacacggcaaccatcacagaaatcagagacagtggtgttatggtgaag
ctttatcccaacatgagcgctgtgctcctacacaactcgcagctcgatcataaacggatc
aaacatccctctgctctcggactggaggtcggacagcagatccaggtgaaatatttcgga
cgcgaccccacggacggcaggatgaggctgtcgcgtaaagtgctccagtctcccgcagcc
acagtggtgaagacgctgagcgagaggcagagcatcaccatgggaacggcagacggacag
acgtcagcttcctcctga
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