Ictalurus furcatus (blue catfish): 128604249
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Entry
128604249 CDS
T09387
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03030
DNA replication
ifu03410
Base excision repair
ifu03420
Nucleotide excision repair
ifu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128604249 (rfc1)
03410 Base excision repair
128604249 (rfc1)
03420 Nucleotide excision repair
128604249 (rfc1)
03430 Mismatch repair
128604249 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ifu03032
]
128604249 (rfc1)
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128604249 (rfc1)
DNA replication proteins [BR:
ifu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
128604249 (rfc1)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
128604249 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_30
AAA_33
AAA_16
AAA_7
Rad17
RuvB_N
AAA_14
AAA_17
RNA_helicase
AAA_18
BRCT_2
nSTAND3
AAA_19
NTPase_1
SKI
AAA_28
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
128604249
NCBI-ProteinID:
XP_053475207
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All DBs
Position
29:3751234..3776065
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AA seq
1128 aa
AA seq
DB search
MDIRRFFAPKPGHGGSSSTDDEPKNKKKPASKVQNTSSKLEDKRAAKRKKRVIADSDEEE
EEKKGKKSSKEKPAASGKKDPVTYVSDSDSDEAFSSLKKSSKLKENGCSREKKASDSKET
KAKQVKTPPVKSPSPKGEAKKNVLGPTAPKHTPTSVFDYFGTATAKRSEKKLVASTSTKR
KAPTRDTEGALDDDEAIAKRLQMDEDMELEKQIHEDEEFARTLAMFDEAPMSKKARVDSR
SPSKTGSQANGAGAKRAPKEPSPKKSPVKASSKLALMKKRADDEEEERRKSEKEEKKSKL
VISPKKEPIARVSSEAAATPKTGVSAGSAKRISTPKSGGGSNKTSPTKPETSPEDAERKR
VNSTAYRNFLNREGPRALGSKVIPQGEENCLEGCVFVLTGVLESLERDDAKSLIERYGGK
VTGNVSRKTTYLVLGRDSGASKTEKAQSFGTKIINEDELLELIRTKPGKKSKYEIAAEAE
SKATKSRSPDSKGKRTPSGRKVSPGKPSASKSSPSPRKSKPSSSSTPGTSRASRQGSSSE
VRKTLEFGAGKSTPSVAGDDGSSLLWVDKYRPRNLKNLIGQQGEQSCANKLLRWLKNWHK
TLSGNAKPTAARFGRFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASC
TRSKNSLKEVIAESLNNTSIKNFYTGASQTVSDKHVLIMDEVDGMAGNEDRGGIQELIGL
IKNSKIPIICMCNDRNHMKIRSLANYCFDLRFHRPRVEQIKGAMMSIAFKEGLKIPPPAL
NEVILASNQDIRQVLHNLSMWSATDKVMTYDQAKADANKAKKDMKMGPFDVCRKVFVSGE
ETAHMTLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGNLKNHLVLLSKTADSICDGDL
VDRQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSTGKHSRIVQELS
SHMSLKTLSSKEAINLDYLPYLRSALLEPLRCRGADGASQSVTLMDDYDIVKEDFDSIME
ISTWGGQADPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKGRRGAVEPDLSVDSDLQG
QEEEEEEEEETLNMDAMIKQKKAKPTKEVKQESARDSGKGKGKGKGRK
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggatatacgcaggttctttgcgccaaagcccggccacggtggcagcagcagcaccgat
gacgagccgaagaataaaaagaaacccgcgtccaaggttcagaatacaagctccaaattg
gaggacaaacgagcagccaaaaggaagaagagggtcatcgctgattcagatgaggaggaa
gaggagaagaaaggaaagaaaagctctaaagagaagcccgctgcatccgggaagaaagat
cccgtgacttatgtttctgattcagactccgatgaagccttttcgtctctgaaaaagtcc
tcgaaactcaaagagaacggctgtagccgcgagaaaaaggcctcggactcgaaggagacc
aaagcgaagcaggtaaaaacgcctcctgttaaatctcctagcccaaagggagaagcgaag
aagaacgtactcggtccgaccgcacccaaacacacccccacctctgtgttcgattacttc
gggaccgccacggccaagagatcagagaagaagctggtggctagtacgagcaccaagagg
aaagcgcctacacgagataccgagggagcgctcgatgacgacgaggccatcgctaaacga
ttacagatggacgaggacatggagttggagaagcagatccacgaagacgaggagtttgct
cgaaccctggccatgtttgacgaggccccgatgtctaaaaaggctcgcgtggactcgcgt
tcgccctcgaagaccggctctcaagcgaacggtgcaggagccaagcgtgcgccgaaggag
ccttcaccgaagaagagtcccgtaaaagccagttccaaactggctctgatgaagaagcga
gccgacgacgaggaggaggagcggcggaagagtgagaaggaggagaagaaaagcaaactc
gtcatctccccgaaaaaagagccaatcgcacgagtttcatcagaggcggcggccacaccc
aaaacgggcgtttcggcgggaagcgcgaaacgcatttccacacccaagagtggaggagga
agtaacaaaacctcccctacgaaaccagagaccagtccggaggacgcggagaggaagcgc
gtgaattccacggcgtatcgaaacttcctgaaccgagaaggacctcgcgccctgggctct
aaagtgatcccgcagggagaggagaactgcctcgagggctgtgtgtttgtgttaacgggt
gttttggagtctctggaacgggacgacgcaaagtcactaatcgagcgctacggtgggaaa
gtcacaggaaacgtcagccggaaaaccacgtacctggtgctgggccgagacagcggagcc
tccaagacggagaaggcacagagttttggcaccaagatcataaacgaggacgagttactg
gaactgatccgaaccaaaccgggcaaaaagtccaaatacgagatcgctgcagaagctgag
agtaaagccactaaatcaaggagcccggactctaaaggcaaacgcaccccttcagggcgc
aaagtctcacctggaaaaccctccgcaagcaagagcagtccctcaccgaggaagtctaag
ccatcttcctcttctacccctggaacttctagagcttcccgccaaggctcttcatccgag
gtcagaaagactttggagtttggtgcaggaaaaagcacgccctctgtggcgggggatgac
ggcagcagcttgttgtgggtggataagtaccgcccccgcaatctgaagaaccttatcggg
cagcagggagagcagagctgtgccaataagctactgaggtggctgaagaactggcataaa
actctcagcggcaatgcaaagccaacagctgctaggtttgggaggttcggcggtaaggat
gatggttctgggtttaaagctgctttgctgtctggacctcctggtgtagggaaaaccacc
actgctgctcttgtgtgcgaggagttgggttacagttacgtggagatgaacgccagctgc
acccgcagcaagaacagtctgaaagaagtaatcgccgagtctctcaataacacgagcatc
aagaacttctacacaggtgcatctcagacggtcagcgataaacacgttctgataatggac
gaggtggatggcatggcaggaaatgaggacagaggaggaatacaggagctgattggtctg
atcaaaaattcaaagatccccattatttgcatgtgtaacgaccgcaaccatatgaagatc
cgctccctcgctaactactgcttcgacctgcgtttccaccggcctcgcgtggaacagata
aagggtgccatgatgtccattgcttttaaagaaggtttaaagatcccgcccccggcgctc
aacgaagtcatcctggcgtcaaatcaggacattcgacaggtgctgcataatttgagtatg
tggtcagccacggacaaggtcatgacctacgaccaggcaaaagcggacgctaacaaggcc
aagaaggacatgaaaatgggaccatttgacgtgtgcaggaaagtgtttgtttcaggtgaa
gagaccgcccacatgaccctgattgacaagtcggaccttttctttcacgattactcgctg
gcaccgctgttcgtccaagagaactacatacacgtccggccagctgccgcagggggaaat
ctgaagaatcatttagtgttgctgagtaaaacggccgacagcatctgcgatggagattta
gtggacagacagatccgttctcgccagacctggtctctgctacccacacaggcaatctac
gccagtgtgctgcctggggaattgatgcgcggttatatgagtcagtttcccacgtttccc
agctggctggggaagttctcatccacgggcaaacacagtcgtattgtacaggagctgtcc
tcacacatgagtctgaagacactgagcagtaaggaggcgataaatctagactacctgccc
tacctgcgttccgccctgctggagcccctgcggtgtcgtggggcagacggagccagtcag
agcgtgacgctgatggacgactacgacatcgtcaaagaggatttcgacagcatcatggag
atcagtacgtggggcggacaggccgatccgtactccaagctcgactccaaggtgaaagct
gcattcacgcgagcttataacaaggagtcccacttgacaccgtactcactgcaggtagta
aagaaaggtcgcagaggagcggtcgaacctgatctgagtgtagacagtgacctccaggga
caggaagaagaggaagaggaggaggaggaaactcttaatatggatgccatgatcaagcaa
aagaaggccaaacccacaaaagaggtcaagcaagagagcgcaagggattccggaaagggc
aaaggcaaaggaaaaggcagaaagtga
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