KEGG   Ictalurus furcatus (blue catfish): 128604280
Entry
128604280         CDS       T09387                                 
Symbol
smu1b
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
ifu  Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:ifu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ifu03041]
    128604280 (smu1b)
Spliceosome [BR:ifu03041]
 Complex B
  Other components
   Complex B specific factors
    128604280 (smu1b)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd EIF3I WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR75_1st LisH_TPL Beta-prop_ACSF4 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_DCAF4 Beta-prop_NWD2_C Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_Nup120_160 Beta-prop_WDR41 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_NOL10_N Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_IP5PC_F Beta-prop_EIPR1 Beta-prop_NUP159_NUP214 Beta-prop_SCAP Beta-prop_LRRK2 Beta-prop_IFT122_1st Beta-prop_DCAF12 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd WD_LRWD1 eIF2A VPS8_N LisH_WDR26 Beta-prop_WDR35_TULP_N LisH_PAC1 PROPPIN LisH DUF7165 Beta-prop_RSE1_2nd DUF1057
Other DBs
NCBI-GeneID: 128604280
NCBI-ProteinID: XP_053475266
LinkDB
Position
29:complement(15934715..15948436)
AA seq 539 aa
MELEVESADVIRLIMQYLKENNLPRTLATLQEESTVALHTVDSIESFTEDVNAGRWDAVL
RAIQHLKLPDGLLIDLYEQVVLELIELKELGAAGCLLTQTDPLIMLKHTQPERYAKLEAL
LTNTHFDPNEVYPEGSSKEKRRSSIAQALVGEVSVVPPSRLMALLGQGRLCESALYRLQE
TKALRQFGSLAMLSLKWQQHQGLLPAGMSIDLFRGKTMMKDLEEERFPTQLSHLLKFGPK
SHVECARFSPDGQYLITGSVDGFIEVWDFTTGKICKDLKYQAQDNFMMMDEAVLCLVVSH
DSEMVVSGAQDGKIQLWRIRNGQCLRKFERAHSKAVTCLCFSRDNSQLLSGSFDQIIRLH
GLKSGKMLKEFQGHTSCINDVIFSHNGQFAISASADGTVKIWNVNTAECTITIKTPDVPE
GSDITVNSVVLVPKNPEHFVVCNRTSTVVVMNVQGQVLRSFSSGVREGGDFVCCTLSPRG
EWIYCVGEDYVLYSFSTITGKLERTLTVHEKDVIGITHHPHQNLIATYSEDGLLKLWKP
NT seq 1620 nt   +upstreamnt  +downstreamnt
atggagctggaggtagaatccgctgatgtgatacggctgatcatgcagtacctgaaggag
aacaatctgccgcgcactctggccacgctgcaggaggagagcacggtggcgctgcacaca
gtcgacagcatcgagagcttcacggaggacgtgaacgccggccggtgggacgcagtgctg
agagccatccaacacctcaaactacccgacgggctgctcatagacctgtacgaacaggtg
gtactggaactgatcgagttgaaagaactcggagccgctggttgtttattgactcagacg
gaccccctgatcatgctgaaacacactcagcccgaacgatacgccaagctggaagctctg
ctcacgaacacgcacttcgacccgaatgaggtttacccagaaggcagcagcaaggagaag
cgcaggtcgtctatagctcaggcgctggttggagaagtcagtgtggttcctccctctcgc
ctcatggctctgctcggacagggtcgtttatgcgagagcgcgctgtacaggttacaggag
accaaagcgctgaggcagttcggatcattagccatgttgtctctgaagtggcagcagcac
cagggtctcctccccgccgggatgtccatagatctgttccgggggaaaaccatgatgaag
gacctggaggaagagcgcttccccacccagctcagccaccttctgaagtttggtccgaag
tcgcatgtagagtgtgctcggttcagtccggatggtcagtatctgattacaggatcagtg
gatggatttatcgaggtttgggatttcactacggggaaaatctgcaaggatttaaagtac
caagctcaggataacttcatgatgatggatgaggcggtgctctgcctggtggtgagtcac
gacagtgagatggtggtgtccggagctcaggacggaaaaatacagctgtggaggattcgt
aacggtcagtgtctgcgcaaattcgagcgcgcccacagcaaagctgtcacctgcctctgc
ttcagcagagacaacagtcagctcctcagtggctccttcgaccagatcatcagacttcat
ggactgaaatcaggaaagatgctgaaggagttccaaggtcacacttcctgcataaacgac
gtcatcttctcacacaacggccagtttgccattagcgcctcagcagatggcacagtgaag
atctggaacgtgaacacggcagaatgcaccatcaccatcaaaactcctgacgttccagaa
ggatccgacatcacagttaacagtgttgttctggtgcccaagaacccggagcactttgtg
gtgtgtaacaggaccagcacagtggttgtcatgaacgtccagggccaggtactgaggagt
tttagctcaggagtgagagagggaggagactttgtgtgttgtacactgtctcctcgcgga
gagtggatctactgcgtgggagaggactatgtgctttactcgttcagcaccatcactgga
aagctggagagaactctgacggtgcacgagaaagacgtgattggcataacccaccaccct
catcagaacctgatcgccacctacagcgaggacggcctgctgaagctctggaaaccgtga

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