Ictalurus furcatus (blue catfish): 128605392
Help
Entry
128605392 CDS
T09387
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04120
Ubiquitin mediated proteolysis
ifu04137
Mitophagy - animal
ifu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
128605392 (prkn)
04120 Ubiquitin mediated proteolysis
128605392 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
128605392 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ifu04131
]
128605392 (prkn)
04121 Ubiquitin system [BR:
ifu04121
]
128605392 (prkn)
03029 Mitochondrial biogenesis [BR:
ifu03029
]
128605392 (prkn)
Enzymes [BR:
ifu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
128605392 (prkn)
Membrane trafficking [BR:
ifu04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
128605392 (prkn)
Aggrephagy
Other aggrephagy associated proteins
128605392 (prkn)
Xenophagy
Other xenophagy associated proteins
128605392 (prkn)
Ubiquitin system [BR:
ifu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
128605392 (prkn)
Mitochondrial biogenesis [BR:
ifu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
128605392 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR
IBR_1
Rad60-SLD
Dsc3_N
IntS9_C
Motif
Other DBs
NCBI-GeneID:
128605392
NCBI-ProteinID:
XP_053476761
LinkDB
All DBs
Position
3:11711683..11830813
Genome browser
AA seq
452 aa
AA seq
DB search
MIVYVRFNASHPVEVEVEEGTSVSELKETVGRLQGVQPDQLRVIFAGRELCSDSTLKAYD
LPEQSTVHVVLPPAGSARRSELVLQRRLSRGVDSLTRLDLSASRLPTTSTGLAVILENED
SHTQTEPKPHSTFYVFCKTVCKSIQPGKLRVRCRTCKQGTLTLSRGPSCWDDVLLPDRIH
GVCQSEDCDGRVAEFYWKCAAHPTCDDDTSVALDLIMTNVRHVPCIACTDVVSPVLVAQC
TERHVICLDCFHMYCITRLNERQFIHDPVVGYSLPCAAGCSDSLIKELHHFRVLGDEQYE
RYQRYAAEECLLQMGGVLCPAPGCGAGLSLEDERRRVQCELKDGLGCGFVFCRDCKERYH
DGECTQQPTPATGGPMQGYVVDEEDALRARWEQASQDIIKETTRPCPKCRVPVEKNGGCM
HMVCPRAQCKFEWCWLCRVEWNRECMGNHWFG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtatgtccgctttaatgccagtcatccggtggaggtggaagtggaagaggga
acaagtgtatcagagctgaaggagacggtgggccggctgcagggcgttcagcctgatcaa
ctacgggtcatttttgctgggagagagctctgtagcgattccaccctaaaggcttatgat
ctgccagaacagagcacggtacatgtggtgctgcctccagctggttcagcacgccgctct
gagctggttttgcagcgcaggctgagcagaggagtagacagtctgacccgactggacctc
agcgcctcacgattgcctaccacctccactggtctcgctgtcatcctggagaatgaggac
tcacacacacaaacagaacccaaaccccacagcactttctatgtgttctgtaagacggtg
tgcaagtctattcagccaggaaaactccgcgtgcgttgccgaacctgcaagcaaggaacc
ctcacactcagccggggaccctcatgttgggatgacgtgcttctcccagataggattcat
ggtgtgtgccagtcggaggactgcgatggccgagtggcggagttttattggaagtgcgct
gcccatcccacttgtgatgatgacacatcggtggcactggacttgatcatgaccaatgtg
cgccatgtcccctgcattgcctgcactgatgttgtgagtcccgttcttgtggctcagtgt
accgagcgtcatgtgatctgcctggattgtttccacatgtactgtataacccgtctgaac
gaacgacagttcatccatgaccctgtggtgggctactcactcccctgtgctgctggatgc
tctgactctctcattaaagagttgcatcatttccgggtgctgggagatgagcagtatgaa
cggtaccagcgctatgcggcggaggagtgtttgctgcagatggggggagttctttgccct
gctccaggctgcggggcgggtctctccctcgaggatgaacgcaggagggtgcagtgcgaa
ctgaaagatggcctcggatgcgggtttgtgttctgccgggactgtaaggagaggtaccat
gacggcgagtgtacacagcagcctacccctgcaacaggaggtcccatgcagggttatgtg
gtagatgaagaagatgccctgcgggcccgctgggaacaagcttctcaggatattataaaa
gagacaacacggccctgtcccaaatgcagagtccctgtggagaagaacggtggctgcatg
cacatggtgtgtcctcgtgcacagtgcaagttcgagtggtgctggctgtgccgtgtggag
tggaatagagagtgtatgggcaaccactggtttggatga
DBGET
integrated database retrieval system
