Ictalurus furcatus (blue catfish): 128605633
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Entry
128605633 CDS
T09387
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
128605633 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ifu03036
]
128605633 (ercc6)
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128605633 (ercc6)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128605633 (ercc6)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
128605633 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
128605633
NCBI-ProteinID:
XP_053477248
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All DBs
Position
3:complement(19452691..19471629)
Genome browser
AA seq
1411 aa
AA seq
DB search
MPIDDNEDPDCPALSSPVSALTPGEKEDNGSSRASSGRSIPESSQEEPAAMACPGNAGPE
NSRKSLLRINRQEIQAVARNDQAAELQGLGVDVYDQDVLEQGVLQQVDRAFQQATMATAR
ADAEKEYESVLDDVRSCISALKHINKILEQLAPHAASSKDISRKIDSVKRQKENKEKQLK
KIQAKQRRLQAVLSGEDIQKLEAELLTEDDTEAGPSTQGSMLMPAQETEWEELIRTGQMT
PFGTRIPQKQEKKEPRKVMLSENSGFDKYLADQAIMAERRKKPTPKKKRTVSRSSSADAP
NNKASSKQEKKLQKRMQKLQRTALKAHPKARPKTEKAFPQARWKGYRDDGTDSEGSEYVP
SDELMDPEEQERDDEFWLDENEEYELKPYKKKEAKTKKSKKDDGSNEYLPSSSEDEDEDA
ERKVKVKKHKDDGDIESYRKRIRNWKRQRLQEKEQKGQAGEDEFEESDAEFDEGFKVPGF
LWKKLFKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQVIAFLAGLSYSKLKTRGSNYR
YAGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHETGSFNNKKEKLIPEIAASHGILI
TSYSYVRIMQDYIQKYDWHYIILDEGHKIRNPNAGVTVACKQFRTPHRFILSGSPMQNNL
KELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVQTAYKCACVLRDSINPYL
LRRMKADVKANLSLPDKNEQVLFCRLTEEQRQVYQNFLDSKEVYQILNGDMQIFSGLIAL
RKICNHPDLFTGGPRMLRGIPAEGLTEEEHFGYWKRSGKLIVVESLLRLWFKQGHRVLLF
TQSRQMLEILEVFVRENGYTCLKMDGTTTIASRQPLIAQYNENKDIFIFLLTTKVGGLGI
NLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQF
LTNRVLKDPKQRRFFKSNDIYELFTLTSPDGSQGTETSAIFAGTGSDVQIPKRHKAPHRS
PSNPKQMSSKPEKPQSSLLCKENASPEPLKRNTPTLNGLSNSSSNKESDSLNITSTSHSA
DGSLTNGHQQDLFIANTPQKHREKKKHCDVTDVASHPSDKHKRKHKKRKHGEDVWFEGHR
ISHLVKKRRYKREDNEDQKETKDEQKNDDYVLAKLFRKSGIHSVMKHDTIMEASNPDYVL
VEAEANRVAKDALKALKVSRQHCRLPFRGSATATPAPARKRFGQKKNSLLKQPSNTAQKA
GEKCKDAEFIKKACIKKLGSAAHFSGEGVEEDALSTSLSSSSLLARMRARNHVSLPQSHD
EEENDNEQRAQSSTPHASATEHDELLVDLRNFVAFQAQVDGQANTREILEYFSPRLTSTQ
TPVFRELLRNICDFHRLPGQEGIWKLKAEYR
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgcctatagacgacaatgaggacccagactgtcctgcactgtccagtccagtgagtgct
ctaacaccaggagagaaggaggacaatgggtccagcagggcctcgagtggacgctccatc
ccggagagcagtcaggaagagccagctgctatggcctgccctggtaatgctgggcctgaa
aactccaggaaatccctgctccgtatcaaccgtcaggagatccaggcggtggctcggaac
gatcaagcagccgagctccagggtttgggagtggacgtctatgatcaagatgttctggag
caaggagtcctgcagcaggtggaccgagccttccagcaggccactatggccacggcgagg
gcagatgcagagaaagaatacgaatccgttctggatgatgtcaggtcatgcataagtgct
ctaaaacacatcaacaagatattagagcagctcgctcctcatgccgcctccagcaaggac
atcagccggaaaatcgactctgtcaaaaggcaaaaggaaaacaaggagaagcagttaaaa
aagatccaagccaagcagaggcggttacaggccgttttgagtggagaggatatacagaag
cttgaggcagagttattgactgaggatgacacagaggcaggcccatccacacagggcagc
atgctcatgcctgctcaggagacagagtgggaagagctcatccgcacaggtcaaatgacg
ccttttggcacacgcatccctcaaaagcaagagaagaaggaaccacggaaggtgatgctg
agtgaaaactctggcttcgacaagtacctcgctgaccaagccattatggcagagagaaga
aagaaaccaaccccaaaaaagaagaggacggtttccaggagttcctctgcagacgcccca
aataacaaggcgtcctccaagcaagaaaagaaactgcagaaacggatgcagaaactccaa
aggactgctctaaaggctcaccccaaagcaaggcctaaaacagagaaagcatttccccag
gccagatggaagggctacagggatgacggcacagacagcgagggctccgagtacgtgcct
agtgatgagcttatggatcccgaggaacaagagcgagatgacgagttctggctggatgaa
aatgaagaatatgaacttaagccttataagaagaaggaagctaaaaccaagaagtcaaaa
aaagacgacggaagtaatgaataccttcctagcagttctgaggacgaggacgaggacgcg
gagagaaaagtcaaggtgaagaaacacaaagacgatggggatattgaatcctacaggaaa
agaattcggaattggaagaggcagagactccaagagaaagagcagaaggggcaagcaggg
gaggacgagtttgaagagagtgatgctgagtttgatgaaggttttaaggtgcctggattt
ctttggaagaaactcttcaagtatcagcagacaggtgtcaggtggatgtgggaactgcac
tgccagcaggcaggaggcattctgggagatgagatgggccttggcaagaccatccaagta
atagctttcctggcaggcctgagctacagcaagttgaagacacgtggctccaattacagg
tatgctggattggggcccacagtcatcgtatgcccagccacagtcatgcatcagtgggtg
aaggagttccatacctggtggcctccattccgtgtagcagttctccatgaaactggttcc
tttaataataagaaggagaagctcatccctgagatagccgctagccatgggatcctcatt
acgtcttactcatatgtacgcattatgcaggattacattcagaaatacgactggcattac
atcatcctggatgagggccacaaaatcaggaacccaaatgcaggcgtgactgttgcatgc
aagcagttccggacccctcatcggttcatcctctctggctcacccatgcagaataacctg
aaggaactttggtccctttttgactttgtgttcccagggaaactggggacacttcctgtc
ttcatggagcagttctcagtgcctatcaccatggggggatattctaatgcctctcctgtg
caggtgcagacagcctataaatgtgcctgtgtcttgcgcgacagcatcaatccgtacctg
ctgaggaggatgaaggctgatgtaaaggccaatctctcattaccagacaaaaatgagcag
gtactgttctgtcgattaactgaagaacagcggcaagtctatcagaactttttggattcc
aaggaagtgtatcagattctgaacggagatatgcagattttctctggcttgatcgcgttg
aggaagatttgtaaccacccagacctgttcaccggtgggccacgcatgttgaggggcata
cctgcggagggactgactgaggaggagcactttggctactggaagcgctcaggcaagcta
atagtggtggagtctctgctcaggttgtggttcaaacagggacacagagtcttgctcttc
actcagtctagacagatgctggagatcctggaggtgtttgtcagggaaaatggatacacc
tgcctcaaaatggatggcaccaccaccatcgcgtctaggcagccgctcatagcgcagtac
aatgagaacaaggatatatttattttccttttgacgaccaaagttggaggattagggatc
aacttgacgggtgcgaacagagtaattatctacgatccggactggaaccctagcacagac
actcaggcccgggaacgtgcttggagaatagggcagaaacagcaggtgactgtgtacagg
ctgctcaccgctgggaccatcgaagagaagatttaccacagacaaatcttcaagcagttt
ctcacaaaccgagtgctcaaggatccaaagcagcggcgttttttcaagtccaatgacatt
tacgagctcttcacccttaccagtcctgacggctcccagggaactgagaccagtgcaata
tttgcaggcactggctcagatgtacagattccaaagagacacaaggcgcctcatcgttcg
ccatcaaacccaaaacagatgtcatcaaagccagagaaacctcagtcatctttactgtgt
aaagaaaacgcttcacctgagcctttaaagagaaacactccaactcttaatggcctatcc
aacagtagctccaacaaggaaagtgactctttaaacattacatccacatcacactctgcc
gatggttcattaacaaatggtcatcagcaggatctctttattgccaacactcctcagaaa
cacagggaaaagaaaaagcactgtgacgtgacagacgttgcgagccatccctcagataag
cataaacgcaagcataaaaaacgtaagcacggcgaagacgtctggtttgagggtcatcgt
atctctcacctggtgaagaagaggagatataaaagagaagacaacgaggatcagaaggag
acaaaagatgagcagaagaacgacgactatgttctcgccaaactcttcaggaagtctggg
atccacagtgttatgaaacatgacacaatcatggaggcatcaaacccagactatgtcctg
gtggaagctgaggccaaccgggtagctaaagatgcccttaaagctctgaaagtgtccaga
cagcactgcagactgccattcagaggatctgcaacagcaacaccagcccctgccagaaaa
cgatttggacagaagaagaactctcttctcaagcagccctcaaacacagcacaaaaagca
ggcgagaaatgcaaggatgcagagttcataaagaaagcatgcatcaagaaactaggatct
gctgcccacttcagtggtgagggagtggaagaagacgcgctttctacctccctctcctcc
tcctcactgttagccagaatgagggccaggaatcacgtcagtttacctcagagccacgat
gaagaagaaaatgataacgagcaaagagcacagtcttccactccacatgcttccgctact
gagcatgatgagctgctggtggatttgaggaactttgtggccttccaggctcaggttgat
ggccaagccaacactcgagagatcctggagtatttcagtccgagactaacctccactcag
actccagtgttcagagaattgcttaggaacatctgtgacttccacaggctccctggacaa
gaggggatttggaaactcaaagctgagtatagatga
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