Ictalurus furcatus (blue catfish): 128605633
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Entry
128605633 CDS
T09387
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
128605633 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ifu03036
]
128605633 (ercc6)
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128605633 (ercc6)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128605633 (ercc6)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
128605633 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
128605633
NCBI-ProteinID:
XP_053477248
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Position
3:complement(19452691..19471629)
Genome browser
AA seq
1411 aa
AA seq
DB search
MPIDDNEDPDCPALSSPVSALTPGEKEDNGSSRASSGRSIPESSQEEPAAMACPGNAGPE
NSRKSLLRINRQEIQAVARNDQAAELQGLGVDVYDQDVLEQGVLQQVDRAFQQATMATAR
ADAEKEYESVLDDVRSCISALKHINKILEQLAPHAASSKDISRKIDSVKRQKENKEKQLK
KIQAKQRRLQAVLSGEDIQKLEAELLTEDDTEAGPSTQGSMLMPAQETEWEELIRTGQMT
PFGTRIPQKQEKKEPRKVMLSENSGFDKYLADQAIMAERRKKPTPKKKRTVSRSSSADAP
NNKASSKQEKKLQKRMQKLQRTALKAHPKARPKTEKAFPQARWKGYRDDGTDSEGSEYVP
SDELMDPEEQERDDEFWLDENEEYELKPYKKKEAKTKKSKKDDGSNEYLPSSSEDEDEDA
ERKVKVKKHKDDGDIESYRKRIRNWKRQRLQEKEQKGQAGEDEFEESDAEFDEGFKVPGF
LWKKLFKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQVIAFLAGLSYSKLKTRGSNYR
YAGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHETGSFNNKKEKLIPEIAASHGILI
TSYSYVRIMQDYIQKYDWHYIILDEGHKIRNPNAGVTVACKQFRTPHRFILSGSPMQNNL
KELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVQTAYKCACVLRDSINPYL
LRRMKADVKANLSLPDKNEQVLFCRLTEEQRQVYQNFLDSKEVYQILNGDMQIFSGLIAL
RKICNHPDLFTGGPRMLRGIPAEGLTEEEHFGYWKRSGKLIVVESLLRLWFKQGHRVLLF
TQSRQMLEILEVFVRENGYTCLKMDGTTTIASRQPLIAQYNENKDIFIFLLTTKVGGLGI
NLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQF
LTNRVLKDPKQRRFFKSNDIYELFTLTSPDGSQGTETSAIFAGTGSDVQIPKRHKAPHRS
PSNPKQMSSKPEKPQSSLLCKENASPEPLKRNTPTLNGLSNSSSNKESDSLNITSTSHSA
DGSLTNGHQQDLFIANTPQKHREKKKHCDVTDVASHPSDKHKRKHKKRKHGEDVWFEGHR
ISHLVKKRRYKREDNEDQKETKDEQKNDDYVLAKLFRKSGIHSVMKHDTIMEASNPDYVL
VEAEANRVAKDALKALKVSRQHCRLPFRGSATATPAPARKRFGQKKNSLLKQPSNTAQKA
GEKCKDAEFIKKACIKKLGSAAHFSGEGVEEDALSTSLSSSSLLARMRARNHVSLPQSHD
EEENDNEQRAQSSTPHASATEHDELLVDLRNFVAFQAQVDGQANTREILEYFSPRLTSTQ
TPVFRELLRNICDFHRLPGQEGIWKLKAEYR
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgcctatagacgacaatgaggacccagactgtcctgcactgtccagtccagtgagtgct
ctaacaccaggagagaaggaggacaatgggtccagcagggcctcgagtggacgctccatc
ccggagagcagtcaggaagagccagctgctatggcctgccctggtaatgctgggcctgaa
aactccaggaaatccctgctccgtatcaaccgtcaggagatccaggcggtggctcggaac
gatcaagcagccgagctccagggtttgggagtggacgtctatgatcaagatgttctggag
caaggagtcctgcagcaggtggaccgagccttccagcaggccactatggccacggcgagg
gcagatgcagagaaagaatacgaatccgttctggatgatgtcaggtcatgcataagtgct
ctaaaacacatcaacaagatattagagcagctcgctcctcatgccgcctccagcaaggac
atcagccggaaaatcgactctgtcaaaaggcaaaaggaaaacaaggagaagcagttaaaa
aagatccaagccaagcagaggcggttacaggccgttttgagtggagaggatatacagaag
cttgaggcagagttattgactgaggatgacacagaggcaggcccatccacacagggcagc
atgctcatgcctgctcaggagacagagtgggaagagctcatccgcacaggtcaaatgacg
ccttttggcacacgcatccctcaaaagcaagagaagaaggaaccacggaaggtgatgctg
agtgaaaactctggcttcgacaagtacctcgctgaccaagccattatggcagagagaaga
aagaaaccaaccccaaaaaagaagaggacggtttccaggagttcctctgcagacgcccca
aataacaaggcgtcctccaagcaagaaaagaaactgcagaaacggatgcagaaactccaa
aggactgctctaaaggctcaccccaaagcaaggcctaaaacagagaaagcatttccccag
gccagatggaagggctacagggatgacggcacagacagcgagggctccgagtacgtgcct
agtgatgagcttatggatcccgaggaacaagagcgagatgacgagttctggctggatgaa
aatgaagaatatgaacttaagccttataagaagaaggaagctaaaaccaagaagtcaaaa
aaagacgacggaagtaatgaataccttcctagcagttctgaggacgaggacgaggacgcg
gagagaaaagtcaaggtgaagaaacacaaagacgatggggatattgaatcctacaggaaa
agaattcggaattggaagaggcagagactccaagagaaagagcagaaggggcaagcaggg
gaggacgagtttgaagagagtgatgctgagtttgatgaaggttttaaggtgcctggattt
ctttggaagaaactcttcaagtatcagcagacaggtgtcaggtggatgtgggaactgcac
tgccagcaggcaggaggcattctgggagatgagatgggccttggcaagaccatccaagta
atagctttcctggcaggcctgagctacagcaagttgaagacacgtggctccaattacagg
tatgctggattggggcccacagtcatcgtatgcccagccacagtcatgcatcagtgggtg
aaggagttccatacctggtggcctccattccgtgtagcagttctccatgaaactggttcc
tttaataataagaaggagaagctcatccctgagatagccgctagccatgggatcctcatt
acgtcttactcatatgtacgcattatgcaggattacattcagaaatacgactggcattac
atcatcctggatgagggccacaaaatcaggaacccaaatgcaggcgtgactgttgcatgc
aagcagttccggacccctcatcggttcatcctctctggctcacccatgcagaataacctg
aaggaactttggtccctttttgactttgtgttcccagggaaactggggacacttcctgtc
ttcatggagcagttctcagtgcctatcaccatggggggatattctaatgcctctcctgtg
caggtgcagacagcctataaatgtgcctgtgtcttgcgcgacagcatcaatccgtacctg
ctgaggaggatgaaggctgatgtaaaggccaatctctcattaccagacaaaaatgagcag
gtactgttctgtcgattaactgaagaacagcggcaagtctatcagaactttttggattcc
aaggaagtgtatcagattctgaacggagatatgcagattttctctggcttgatcgcgttg
aggaagatttgtaaccacccagacctgttcaccggtgggccacgcatgttgaggggcata
cctgcggagggactgactgaggaggagcactttggctactggaagcgctcaggcaagcta
atagtggtggagtctctgctcaggttgtggttcaaacagggacacagagtcttgctcttc
actcagtctagacagatgctggagatcctggaggtgtttgtcagggaaaatggatacacc
tgcctcaaaatggatggcaccaccaccatcgcgtctaggcagccgctcatagcgcagtac
aatgagaacaaggatatatttattttccttttgacgaccaaagttggaggattagggatc
aacttgacgggtgcgaacagagtaattatctacgatccggactggaaccctagcacagac
actcaggcccgggaacgtgcttggagaatagggcagaaacagcaggtgactgtgtacagg
ctgctcaccgctgggaccatcgaagagaagatttaccacagacaaatcttcaagcagttt
ctcacaaaccgagtgctcaaggatccaaagcagcggcgttttttcaagtccaatgacatt
tacgagctcttcacccttaccagtcctgacggctcccagggaactgagaccagtgcaata
tttgcaggcactggctcagatgtacagattccaaagagacacaaggcgcctcatcgttcg
ccatcaaacccaaaacagatgtcatcaaagccagagaaacctcagtcatctttactgtgt
aaagaaaacgcttcacctgagcctttaaagagaaacactccaactcttaatggcctatcc
aacagtagctccaacaaggaaagtgactctttaaacattacatccacatcacactctgcc
gatggttcattaacaaatggtcatcagcaggatctctttattgccaacactcctcagaaa
cacagggaaaagaaaaagcactgtgacgtgacagacgttgcgagccatccctcagataag
cataaacgcaagcataaaaaacgtaagcacggcgaagacgtctggtttgagggtcatcgt
atctctcacctggtgaagaagaggagatataaaagagaagacaacgaggatcagaaggag
acaaaagatgagcagaagaacgacgactatgttctcgccaaactcttcaggaagtctggg
atccacagtgttatgaaacatgacacaatcatggaggcatcaaacccagactatgtcctg
gtggaagctgaggccaaccgggtagctaaagatgcccttaaagctctgaaagtgtccaga
cagcactgcagactgccattcagaggatctgcaacagcaacaccagcccctgccagaaaa
cgatttggacagaagaagaactctcttctcaagcagccctcaaacacagcacaaaaagca
ggcgagaaatgcaaggatgcagagttcataaagaaagcatgcatcaagaaactaggatct
gctgcccacttcagtggtgagggagtggaagaagacgcgctttctacctccctctcctcc
tcctcactgttagccagaatgagggccaggaatcacgtcagtttacctcagagccacgat
gaagaagaaaatgataacgagcaaagagcacagtcttccactccacatgcttccgctact
gagcatgatgagctgctggtggatttgaggaactttgtggccttccaggctcaggttgat
ggccaagccaacactcgagagatcctggagtatttcagtccgagactaacctccactcag
actccagtgttcagagaattgcttaggaacatctgtgacttccacaggctccctggacaa
gaggggatttggaaactcaaagctgagtatagatga
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