Ictalurus furcatus (blue catfish): 128605748
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Entry
128605748 CDS
T09387
Symbol
zgc:152968
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
128605748 (zgc:152968)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ifu03009
]
128605748 (zgc:152968)
Ribosome biogenesis [BR:
ifu03009
]
Eukaryotic type
Pre-60S particles
RNases
128605748 (zgc:152968)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
UPF0184
YwqH-like
Motif
Other DBs
NCBI-GeneID:
128605748
NCBI-ProteinID:
XP_053477437
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Position
3:32133078..32149709
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AA seq
1283 aa
AA seq
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MVQKLLKPEPQSPAESASPALHSPLCTTSTPAVQELLKSSETPPTPTPMFPSAGLFSETD
CPFLTWGGCERPYCPYKHIKEEDRTGVCAGSARATAEKGHGNHTAARRNFHNQEQSHTCL
SELERINKQIEAVRNEVEKEQKRLSRYQSEQAESAGASSEEYLVTRKTLSKDQNGNQLKC
KKATGGARKYVVDRTKPKTDLEYDPCSNFSADLRSGSSTDKMKSTNKADVEHDQRDKGKG
KSVSADPVPSPPCNFEDSDEEGELVIDIPTFEIDGNKGSPIQSSSASENAHFMKITSESS
EMAHLDTDIENKAEKIKPLKKGMTSIGEQQESLYKETDLVKRRHPMLQKEKMPSVRVLAV
GSIPIEDEQKPSVHPRMAKEEPESSKRMMEIDNSPAENNQVLHKSLKQNSAASKNDECEE
KILNYATVNSPELHEHARSSSVACLSQVFQSEKPTPANSVNAGVHEEKAQNIENVLDDIS
ICLDHLRRESENITCLQDVDALLLDPVHSAPSCSKIHGDYSLQPVAQKLQRQTEPEIKPN
NWLSGHINKMDTMPLTHSTEIPQKTSVFQDYPSTTSSLPAINKDPGSCKNIPTSVETNWP
FAHKVQAEPVQNVPLYNSGTDTAMVPSPQMELNPAATSMDLTGGQILEKPPALLGATDDK
ITVDSSSSEELNYSDLDLSESDPMEECYRIFMEANQAEDPTVQGDMPVSGWMVKPALAEK
KRVAHVAKFEVSKSKAQVIVPLRDGGSQLPMPSRSQQCQKRATSLTAAVKGCQSFIAANA
PKRVLTSTVIHPTAVPNNYANIFPVGATWQIGPNLHLIVPEGSCAVPVTLIPAVAMPAAR
PVHPLAPKPQPTKPANYTPAKQMNNLNLSHKCSIIQSIPTKRKAKGRSEVGVKVPHDVRQ
RYVNLFVEEFLKTSATVQDAFEKALAEEKTLFDRSVNKLKYLSIAVNALKRLKNQNAAPA
KFSSERDAQASRGNVPLSSQALLQNGDTTLYDQLKEHILTEAMLRENNYPHKHPDKPGFA
IQYGDTKKGSADVSRRICCRCGTSFCISQTGKHTRTEECNYHYGKVMENRVPGGVETRYS
CCENAVGSPGCQVFKLHVHDAVSLQGFVSSLPQTHVGCPGIYAIDTEMCYTTQGLELVRV
TVVNSSLQVIYDTFVNPTNEVIDYNTRFSGVSEEDVKNSSSSLQDVQAVLLSFISEGTIL
VGHGLENDLSALKIIHSTVVDTSVVFPHRLGPPHKRQLRSLTAEYLRKIIQESVEGHDTK
EDATACMELMLWKVKEDGKGKRW
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggtacagaaactgctcaaaccagaaccgcaaagccctgcagaaagtgcatctccagct
ctgcactcccctctctgcacaacatctacaccagcagtacaagagctgctaaaatcatca
gagactccacccaccccgaccccgatgtttccttccgctggactcttctctgaaaccgac
tgtccttttctcacttggggcggatgtgagcgaccttactgtccatacaaacacatcaaa
gaagaagaccgcacaggtgtttgtgccggaagtgcgcgcgcgacagctgaaaaaggtcat
ggcaatcataccgctgctagaagaaacttccacaaccaggaacagagccacacttgtctt
tcagagctggaaaggatcaacaaacagattgaagcagttagaaatgaagtggagaaggaa
caaaaaagactgtcccgctaccagtctgaacaggctgagagtgctggtgctagctcagaa
gaatatcttgtgaccagaaaaactttgtctaaagaccagaatggaaaccagctgaaatgt
aaaaaggccactggtggtgcccgcaaatatgttgttgatcgcaccaaacccaaaactgat
ctggaatatgacccttgttcaaatttttctgctgatctgcgatctggcagttcaacagat
aaaatgaagtcaaccaataaagctgatgtggaacatgatcagcgggacaaaggaaagggt
aagagtgtgtctgctgatccagttcccagtcctccttgcaattttgaggattctgatgag
gagggggaactagtcattgacattccaacctttgaaattgatgggaacaagggatctccg
atacagagctcatcagccagtgaaaatgcacattttatgaagataaccagcgaatcttca
gaaatggcccatcttgacactgacatagaaaacaaagcagaaaagattaagccattgaag
aagggtatgactagcatcggtgaacaacaggagtctttgtacaaggagactgatttggta
aaacgaagacaccccatgctgcaaaaggaaaaaatgccttctgtaagagtactcgctgtt
ggaagtatacctattgaagatgaacaaaaaccctcagttcatcccaggatggccaaggaa
gaaccagaatcatccaagaggatgatggagattgataactcacctgcagaaaataatcaa
gtgcttcataagagcttgaaacaaaactctgctgcatccaagaatgacgaatgcgaggag
aagatcttgaactatgcgactgtcaattctccagaattgcatgaacatgcaaggtcctct
tcagtggcatgtctttcacaggttttccaatcggaaaaacctactcctgcaaacagcgtg
aatgctggtgttcatgaagagaaagcacaaaatattgaaaatgttctagacgatatttcc
atttgcctggaccacctgagacgtgaaagtgagaacatcacttgccttcaagatgtggat
gctctcctccttgaccctgtccattctgctcccagttgctcaaagatacatggagattat
tctttacagcctgtcgcacaaaagctgcaaaggcaaacagaacccgagataaaaccaaat
aactggctctcgggtcacattaacaaaatggacaccatgccccttacacactcaacagag
atcccacaaaagacatcagtatttcaggattacccttccaccacttcctctttaccagcc
ataaataaggatcccggctcttgcaagaacattccaacttctgttgaaacaaactggcca
tttgcacataaagtccaagctgaacctgttcagaacgtacctctgtacaattctggaact
gacacagcaatggttccttctccacagatggagctaaacccagctgctacatctatggat
ttgactgggggtcagatcctggagaaaccacctgctctactgggtgcaacagatgataag
ataacagttgactctagttcttcagaagagctcaattattcagacctagacctttcagag
agtgatcccatggaagagtgctacagaatctttatggaagccaaccaggctgaagatccc
acagttcaaggtgacatgccagtaagtggatggatggtcaagccagctcttgctgagaaa
aagagagtagcccatgtagcgaagtttgaggtcagtaagagcaaagcacaggtcatcgtg
ccccttagagatggcggttcccagctgcccatgcccagccggagtcagcagtgtcagaag
agagcaacatctcttacggcagcagtgaaagggtgccaatcctttattgcagccaacgca
cccaagcgagtcctcacatctactgtcattcatccaactgctgtgccaaacaactatgca
aacatcttcccagttggagcgacctggcaaatcggcccaaaccttcacctgattgtcccc
gaagggagctgtgctgtaccggtcacactgatccctgctgttgctatgcctgcagcacgt
ccagtccatccactagccccaaaaccacagcctactaaaccagccaattacacacctgca
aagcaaatgaataatttaaacctgtcccataaatgttcaatcattcagtcaattcccacc
aagcgcaaagcaaaaggacgttcagaggtcggcgtaaaggttcctcatgatgtacggcag
cggtacgtaaatctgtttgtggaggagttcctgaaaacatccgccactgtgcaagatgcc
tttgaaaaggccctagcagaagagaagactttgtttgatcgcagcgtcaataaactgaag
tatctaagcatagcagtgaatgcactcaagaggcttaaaaatcaaaatgccgctcctgcc
aaattttccagtgaaagagatgcacaagcgtctagaggaaatgtgccactcagttctcaa
gcactactgcaaaatggtgacaccacactgtacgatcagctgaaggagcatattctaacc
gaggccatgttgagggagaataactatcctcacaaacaccctgataaacctggattcgcc
attcagtatggtgacaccaaaaagggcagcgctgacgtttccaggagaatctgctgtcgc
tgtggaacttctttctgcattagccagacaggaaaacacactcgcacagaagagtgcaac
tatcattatgggaaagtcatggaaaacagagtaccaggaggtgtggagacgcgctatagc
tgctgcgagaacgcagtcgggtcgcctgggtgccaagtgttcaagctccatgtccatgat
gcagtgagtctccaaggctttgtaagcagcctccctcagactcatgtgggctgcccaggg
atttatgctattgatactgaaatgtgctataccacgcagggtctggaactggtgagggtc
acggtggtgaacagcagtctgcaggtcatctatgacacctttgttaatcctactaatgag
gtcatcgactacaacaccaggttctcaggagtcagtgaggaggatgtgaagaacagcagt
tcatctttgcaagatgtgcaagctgtgcttttgagcttcatcagcgagggaaccattctc
gttggacatggtttggaaaatgatctctctgctctgaaaattatccacagcacggtggtc
gacacgtctgtggtgttcccccatcgcctgggtccgccgcacaagagacagctcagaagc
ttgacagccgagtatctgaggaagataatccaagagagcgtggagggacatgacaccaaa
gaggacgcgacagcgtgcatggagctcatgctctggaaggtgaaagaggatggtaaaggg
aagagatggtga
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