Ictalurus furcatus (blue catfish): 128606059
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Entry
128606059 CDS
T09387
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128606059 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128606059 (smarca5)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128606059 (smarca5)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
128606059 (smarca5)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
128606059 (smarca5)
RSF complex
128606059 (smarca5)
WICH complex
128606059 (smarca5)
B-WICH complex
128606059 (smarca5)
NORC complex
128606059 (smarca5)
BRF complex
128606059 (smarca5)
NuRF complex (fruit fly)
128606059 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
128606059
NCBI-ProteinID:
XP_053478020
LinkDB
All DBs
Position
3:complement(31438760..31454630)
Genome browser
AA seq
1030 aa
AA seq
DB search
MSETEGSVDKQREEEAEVEQPATTQDAALGAEEAGQDGGEPSSSPPAEKAKAEPAACYEE
KVKTDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSAGDNR
HRRTEQEEDEELLSESSKAANVCTRFDESPSYVKTGKLRDYQVRGLNWLISLYENGINGI
LADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMNEFNRWVPSLRAVCLIG
DREERTAFIRDTLLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSE
IVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLVE
RLHTVLRPFLLRRIKADVEKSLLPKKEVKMYVGLSKMQREWYTKILMKDIDILNSAGKMD
KMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMAVLDKLLPKLKEQGSRV
LIFSQMTRMLDILEDYCMWRNYGYCRLDGQTPHEERQISINVFNEPNSPKFLFMLSTRAG
GLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITENTVEERIVERAE
MKLRLDSIVIQQGRLVDPNMNKLGKDEMLSIIRHGATHVFASKESEITDEDIDVILERGE
KKTMEMKEKMSTLGEGSLRNFTMDTENSVYNFEGEDYREKKKVITNWIEPPKRERKANYA
VDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRN
PELPNAAQVQKEEQAKIDEAEPLNEEELEEKENLLSQGFTIWNKRDFNQFIKANEKWGRD
DIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDS
KIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRNSPQF
RFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPRNSSAQKRKQDGTPD
GRGRKKKLKL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagacggagggaagcgtggacaaacagcgggaagaagaggctgaagttgagcaa
cccgcgacaacacaggatgcggctttaggtgctgaagaagcggggcaggatggaggcgag
ccgtcgtcctctcctccggctgaaaaggcgaaggcggagccggcggcgtgttatgaagag
aaagtgaaaacagaccggaccaacagattcgagtacctgctgaagcagacggaggtgttt
gctcactttattcaacctgctgcgcagaagacccctacgtctccgctgaagatgaagccc
ggccgccctcgcattaaaaaggacgagaaacagaacctcctgtctgctggggataaccgt
caccgccgtaccgagcaggaggaggatgaggagctgctcagtgagagcagtaaggccgcc
aacgtgtgcacgcgctttgacgagtctccatcctatgtgaaaacgggcaaactccgagat
tatcaggtccgtggactgaactggctgatttcactgtacgagaacggaatcaacggcatc
ctggctgacgagatgggtctcggaaagactctgcagaccatttctctcctcggctacatg
aaacactacaggaacatccccgggcctcacatggttctggttcccaagtccacgctgtat
aactggatgaacgagtttaatcgctgggtcccctcgctccgagctgtctgcctcatagga
gaccgggaagagaggaccgcgttcatccgtgacactctgttgccaggagagtgggacgtg
tgtgtcacttcctatgaaatgctcatcatcgagagggctgtgtttaagaagtttaactgg
agatacttggtgatcgacgaggcccatcgtatcaagaacgagaaatcgaagctgtcagaa
attgtgcgagagttcaagaccaccaaccggttgctgctcacagggaccccgcttcagaac
aacctgcacgagctgtgggctctgctcaacttcctcctgcctgatgtcttcaactcctcc
gaggactttgattcctggtttgacacaaataactgtcttggagaccagaaactggttgag
cgtttacacactgtattacgtccttttctactgaggcgtatcaaagctgatgtggagaaa
tctctgcttcctaagaaagaagtcaagatgtatgtcgggctcagcaagatgcagagagaa
tggtatactaaaatcctgatgaaggacatcgatatcctgaactcggcagggaagatggat
aagatgcgtctgctgaacgtgttgatgcagctcaggaagtgctgcaatcacccgtacctg
tttgatggcgcggagcctggcccaccttacaccactgacctccatcttgtcgtcaacagc
ggcaagatggccgtactcgataagctgctgcccaagctgaaggaacaaggttctcgtgtg
ttgatcttcagccagatgaccaggatgctggacattctggaagactactgcatgtggcgt
aactacggttactgccgcctggacggacaaacgcctcacgaggagagacagatctccatc
aatgtctttaatgagcccaacagtcccaagtttctctttatgctgagcactagggccggt
gggctggggattaacctggctacagcggacgtggtcattatttatgactctgactggaat
cctcaagtggacctgcaggccatggaccgcgctcacagaatcggacagaagaagcaagta
cgcgtgttccgtttcattacagagaacaccgtcgaggagaggatcgtggaacgtgccgaa
atgaaactacgtctggactccatcgtcatccagcaaggtagattggtcgatcctaacatg
aacaagctgggcaaagatgagatgctgtctatcattcggcacggcgccactcacgtcttc
gcttccaaggagagcgaaattacagacgaagacatcgatgtcatcctggagagaggcgaa
aagaagaccatggagatgaaggagaagatgtccacgcttggtgaaggctctctgcggaat
ttcaccatggacactgaaaacagcgtgtacaacttcgaaggcgaggattaccgagagaag
aaaaaggtcatcaccaactggatcgaaccaccaaaaagagagcgtaaagccaactacgct
gtcgatgcttacttcagagaggccctgcgtgttagtgagcctaaagcgccaaaggctcct
cggcctcccaaacagcccaacgttcaagacttccagttcttccctcctcggcttttcgag
ctgctcgagaaagagatcttgtactacaggaaaactattggctacaaggtgccgaggaat
cctgagctgcccaatgctgctcaggtgcagaaggaggagcaggcgaagatcgatgaagca
gaacctctgaatgaagaagagctggaggagaaggagaacctcctgtcgcagggcttcacc
atttggaacaagcgagatttcaatcagttcataaaggctaatgagaaatggggaagagac
gatattgagaacatcgcccgtgaagtggaaggcaaaacacctgaagaagtcatggaatat
tctgctgtgttttgggagcgctgtaatgagctgcaggatattgagaagatcatggctcag
attgagagaggtgaagccaggattcagaggaggatcagcatcaagaaagcactggactca
aagatcggacgttacaaggcaccgttccaccagctgaggatttcttacgggaccaacaag
gggaagaactacaccgaggaggaagaccgattcctcatctgtatgctgcacaagctgggt
ttcgacaaggaaagcgtttacgacgagctgcgccagtgtattcgcaactcgcctcagttc
cgcttcgactggttcctgaagtctcgcacggctatggagctacagaggagatgtaacaca
ctgatcactctgatcgagcgcgagaacatggagctggaagaacgagagaaggcggagaag
aagaaacgaggacctcgcaattcttcagcacagaaacgtaagcaggacgggaccccagac
ggccgcggtcgtaaaaagaagctgaagttgtaa
DBGET
integrated database retrieval system
