Ictalurus furcatus (blue catfish): 128606500
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Entry
128606500 CDS
T09387
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128606500 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128606500 (exosc5)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
128606500 (exosc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
128606500
NCBI-ProteinID:
XP_053478637
LinkDB
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Position
4:complement(6258804..6263700)
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AA seq
218 aa
AA seq
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MELDIGSSVLREFGSEQSLLSKPDGSATFMQGDTSVLVGVYGPAEVKVNKEIYDRATLEV
LIQPKSGMPSVRERTREQCVRETCEAALLSTLHPRSSLTLVMQVVHDDGSLLACCLNAAC
TALMDAGLPMSRLFCGVTCAIDAESQIITDPTAQQEKESRALMTFAIDSKEHNVMMSSTK
GSFSVKEMQQCIAVSQKASERIFQFYRDSVKRRYSKIL
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atggagctggatattggtagttcagttttgagagagttcggcagcgaacagagtttatta
tccaaacctgacggttcagccacgtttatgcaaggagacaccagtgtgctggtaggagtg
tacggaccagctgaggttaaagtgaacaaggagatctatgatcgagcaactttggaagtt
ctgatccaacccaaatccggcatgcccagtgtgcgggagcgcacgagagagcagtgtgtg
cgggagacgtgtgaggccgctctgctgtccactctccatccacgctcatccctcacgctc
gtcatgcaagtggttcacgatgacggatcgttgttagcgtgctgtctgaacgccgcatgc
acggcgctgatggatgccgggctgcccatgagccgcctgttctgcggagtcacgtgtgcc
atcgacgccgagagccaaatcatcacagaccccacagctcagcaggagaaggaaagccga
gcactaatgaccttcgcaatcgacagcaaagagcacaatgtcatgatgtcatcgacaaaa
ggttctttctctgtgaaagagatgcagcagtgtatcgcggtcagtcagaaggcatctgag
cggatcttccagttttacagggattctgtgaagcgacgatactccaaaatattatga
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