Ictalurus furcatus (blue catfish): 128606648
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Entry
128606648 CDS
T09387
Symbol
smg9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9 isoform X1
KO
K18735
protein SMG9
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128606648 (smg9)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128606648 (smg9)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
AAA_16
MeaB
Motif
Other DBs
NCBI-GeneID:
128606648
NCBI-ProteinID:
XP_053478943
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Position
1:complement(7656153..7668329)
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AA seq
504 aa
AA seq
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MSESGHSQPGMYGQGRRRRRRRDREPGPPGQNLSGPSRDRDYGPRERRDGSEEPSGPLLQ
KTPIILAKPPGERAKPSAAVSGAPLEKPIMLIKARDEGGKPGSTPDAAPPVSGSGAAKLE
REGQRPTQPVYQIQNRGMASTASTCAVDPVIGQTKLLPPEKMKHSIKLVDDQMNWCDSAM
EYLRDQTDMLVVGVLGLQGMGKSTIMSLLSANMPEEDQRAYVFRAQTQEIKERGGNQTSG
IDFYITQERVIFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQIAAFLFTVC
HVVIVVQDWFTDINLYRFLQTAEMLKPSTPSASHDSGGSSGPDDGSEYYPHLIFLQNKAR
REEFCPRNLKDMHMVVDKLMAHSHLKYKGMLSMLDCNIFPGLDRDYLEHEVNLFLLPILE
NDGDDALTRAGSGSGPLFSLLPGYKGHPSFSSLVTKLRSQVLAMSRNQLSHTILTEKNWF
HYAARIWDGVKKSSALSEYSRLLS
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtctgggcacagccagcctggaatgtacggacagggacggaggagacgaaga
cggagagatagggaacctggaccacctggacaaaatctctccggaccgagtcgggataga
gactacggcccacgggagaggagggatgggagtgaggagccatctggcccacttcttcag
aaaactccaattattctggccaaaccaccgggagaaagggcgaagccgagtgctgctgtc
agtggtgctccgttagagaagccaattatgctgataaaagccagagatgaaggaggcaaa
ccgggcagcacaccagacgctgctcctccagtttctggctccggagcagctaagctggag
agggagggtcaacgtccaacacagcccgtgtatcagatccagaatcgcggaatggcttcg
actgcatccacctgtgctgttgatcctgttattgggcagacgaagctcctccctcctgag
aaaatgaagcacagcattaaactagtggatgaccagatgaattggtgtgacagcgctatg
gagtatctgcgggaccagactgacatgctggttgtgggtgtcctagggctccaggggatg
ggaaagtccaccatcatgtctcttctctcagccaacatgcccgaagaagaccaaagggca
tacgtgttcagggcccagacgcaggagatcaaagagagagggggcaaccaaaccagtgga
atcgacttctacattacacaagagagagtcatcttcctggacacacagccaattctgagt
ccttcaatcttggatcatctcatcaataatgaccgcaagctgccaccagagtataacctg
ccacacacgtatgtggagatgcagtctctacagatagctgcttttctcttcactgtgtgc
catgttgtaatcgtggttcaggactggtttacagacatcaacctctataggtttttacaa
accgctgagatgctgaagccttcgactccgtctgccagccacgacagtggaggttcatca
ggaccagatgatggatcagaatactatcctcacctcatttttttgcagaacaaagcaaga
agggaggagttttgtccccgaaacctgaaagatatgcacatggttgtggacaaactgatg
gcccattcccacctgaaatataaaggcatgctatccatgttggactgtaatatattccct
ggactggaccgggactaccttgaacatgaagtaaatctcttccttttgcccattttggag
aatgatggagatgacgctttgacaagagcaggatctggatctggtcctcttttctctctg
ctgcctggctacaaaggccacccgagcttttcctctctggtgaccaaactgcgtagccaa
gtcctggccatgtcccgcaatcagctctcccacaccatcctcactgagaaaaactggttc
cactatgctgccagaatttgggatggggtaaagaagtcctcagcgctatccgaatacagc
cgcttactgtcgtaa
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