Ictalurus furcatus (blue catfish): 128606685
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Entry
128606685 CDS
T09387
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128606685 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128606685 (sf3b3)
03041 Spliceosome [BR:
ifu03041
]
128606685 (sf3b3)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128606685 (sf3b3)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
128606685 (sf3b3)
Spliceosome [BR:
ifu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128606685 (sf3b3)
Complex B
128606685 (sf3b3)
Complex C
U2 SnRNP specific factors
128606685 (sf3b3)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
128606685 (sf3b3)
TFTC complex
128606685 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
128606685
NCBI-ProteinID:
XP_053479000
LinkDB
All DBs
Position
4:complement(12780018..12816442)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGITHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHSSKNMFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPLDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRRFVIHPETNNLVLIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLINPIQGNTLDLVQLEQNEAAFSVAVCRFANGG
DDWYVLVGVARDMILNPRSVGGGYIYTYRLVGGGEKLEFVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDIQESLFWVRYKRNENQ
LIIFADDTNPRWVTTACLLDYDTMAAADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKADVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacctgaccttgcagcgtgctactggcatcactcatgccatccatggc
aacttctcaggtaccaagcagcaggagattgttgtttctcgaggaaagattctggagctg
ctgcgtcctgatgcaaacacgggaaaagttcacacactgctcaccatggaggtgttcggc
atcgtccgctctctcatggccttcaggctgacaggtggcacaaaagactacatcgtggtg
ggcagtgattcaggacgtattgtcatcctggagtatcactcctccaagaacatgtttgaa
aaggtgcaccaggagacctttggcaagagtggctgtagacgcattgttccaggacagttc
ctggctgtggatcccaaaggcagagctgttatgatcggtgctatagagaagcagaaattg
gtgtacattctgaacagagatgcagctgctcgcctcaccatctcctcccctctggaagca
cacaaggctaacacactcgtctaccatgtggttggggtggatgttggttttgagaacccc
atgtttgcctgtctcgagatggactatgaggaagctgataacgaccccacaggtgaagca
gcagctaacacacagcagactctgaccttctatgagttggacctgggactcaaccacgta
gtgcgcaagtacagcgaggctctggaagagcatggaaacttcctcatcacagtgcctggt
ggctctgatggtccgagtggtgtgctcatttgctcagaaaattacatcacttacaagaac
tttggggaccagccggatatccgctgcccaatcccacgcagaaggaatgacctggatgat
ccagagaggggcatgatcttcgtctgctcagccacacacaaaaccaagtccatgtttttc
ttccttgcccagactgagcaaggagacatcttcaaggttaccctggaaacagatgaggag
atggtcacagagatcaggatgaaatacttcgacaccatcccggtggccactgcaatgtgt
gtgctgaagactggcttcctatttgtggcatcagagtttggaaaccattatctgtatcag
atagcccacctgggtgatgatgacgatgaaccagagttttcttctgccatgcctctggaa
gaaggagacacctttttcttccagccaagaccacttaagaacctggtgcttgtggacgaa
caggagaacctttcccccatcatgtcctgccagatcgccgatttggccaacgaggacaca
cctcagctatatgtggcatgtggtagaggaccaagatctacgctaagggttcttagacat
ggtctggaggtctcagagatggctgtgtcagaacttcctggtaaccctaatgctgtgtgg
actgtgaggaggcatgtagaagatgagtttgacgcctacatcattgtgtccttcgttaac
gccacactggtgctgtcaatcggagaaactgtggaagaagtgactgactctggcttcctg
ggtactaccccaactttgtcctgttctctgcttggggaggatgctctggtacaggtctac
ccagatggtattcgccatatccgagcagataagcgtgtgaatgagtggaagactccagga
aaaaagacaattgtgcgctgtgctgtgaaccagcggcaggtggtcattgccctgactgga
ggagagctggtgtactttgagatggacccgtcaggtcagctgaatgagtacactgagaga
aaggagatgtctgcggatgtggtgtgcatgagccttgcgaacgttcccccgggtgagcag
cgctcacggttcctggctgtgggcttggtggataacactgtgcggattatctcactagac
cccttggattgtctacagccactgagtatgcaggctctgcctgcacagccagaatctcta
tgtatagtggagatgggaggtgtggagaaacaagatgagttgggagagaaaggtaccatc
ggcttcctctacctcaacattggcttgcagaacggtgtgttactccgcactgtgctggac
ccagtgactggagacctgtctgacactcgcacacgctacctgggctctcgaccagtgaag
cttttcagagtgcgaatgcagggccaggaggccgtgttggccatgtccagtcgatcatgg
ctgagctactcataccagtcacgtttccatctgacgccactttcatatgaaaccctggag
tacgcctcagggtttgcttcagagcaatgtcctgaaggcattgtggccatctctaccaac
actttgagaattctggctctggagaagctgggtgctgtttttaatcaggtagctttcccg
ctccagtatacaccacgcagatttgtcattcacccagagaccaacaacttggtcctcatt
gaaactgaccacaatgcttatactgaagccaccaaggcccagcgcaagcagcagatggca
gaggaaatggtggaggctgccggagaggatgagagggagctggctgcagaaatggctgct
gcctttttgaacgagaaccttccagaagccatctttggtgccccaaaggctggctcagga
cagtgggcctcactggtgcgcctgatcaaccccatccagggcaacaccctggacttggtt
cagctggagcagaatgaagcagcctttagtgtggctgtttgtcgctttgctaatggaggt
gatgactggtatgtgttggtgggtgtggcaagagacatgatccttaacccacgctcagtg
ggcggtggctacatttatacctaccgcctggttggaggtggtgaaaagctggagtttgta
cacaagaccccagtggaggatgtgcccctggccatcgcccccttccagggcagagtgttg
gtgggggtgggcaaactgctgcgcatctatgaccttggcaaaaagaagctgctccgcaag
tgtgagaacaagcatgttcctaacctggtgacgggcatccacaccattggccagcgtgtg
attgtgtcagacatccaagaaagtctattctgggtgcgctacaagcgcaatgaaaaccag
ctcatcatctttgctgatgacacaaacccacgctgggttaccaccgcctgtctgctcgac
tatgacaccatggctgcagctgacaagtttgggaatattagtattgttcgtctaccacca
aataccagtgatgatgtggatgaggaccccacagggaacaaagcattgtgggacagaggc
ctgctcaatggagcctcccaaaaggctgatgtaattatgaactatcacataggagaaaca
gtcctgtcactgcagaagaccacgctcatccctggaggctcagagtctctggtgtacacc
actctctcaggtggcattggcatccttgtgcccttcacctctcatgaggatcatgacttc
ttccagcacttagaaatgcacatgcgctcagagtttcctccactttgtggccgagaccat
cttagcttccgctcctattatttccctgtgaagaatgtaattgatggagatctctgtgag
cagtttaactccatggatccccacaagcagaaaagtgttgctgaagagttggaccgcaca
ccaccagaagtgtctaagaaactggaagacatccgcacacgttatgccttttaa
DBGET
integrated database retrieval system
