Ictalurus furcatus (blue catfish): 128606723
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Entry
128606723 CDS
T09387
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ifu03009
]
128606723 (ighmbp2)
03012 Translation factors [BR:
ifu03012
]
128606723 (ighmbp2)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128606723 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
128606723 (ighmbp2)
Ribosome biogenesis [BR:
ifu03009
]
Eukaryotic type
Other ribosome biogenesis factors
128606723 (ighmbp2)
Translation factors [BR:
ifu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128606723 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
DEAD
ResIII
Viral_helicase1
Helicase_RecD
nSTAND3
IstB_IS21
AAA_16
UvrD-helicase
PhoH
AAA_22
Flavi_DEAD
AAA_25
SRP54
SLFN-g3_helicase
DnaB_C
AAA_31
Zot
NPHP3_N
ATPase
AAA_18
AAA_33
ATPase_2
DUF3739
AAA_5
AAA_7
UvrD_C_2
AAA
ABC_tran
Motif
Other DBs
NCBI-GeneID:
128606723
NCBI-ProteinID:
XP_053479052
LinkDB
All DBs
Position
4:complement(13845493..13858481)
Genome browser
AA seq
1001 aa
AA seq
DB search
MEVESFVSKSLELLQEERGAEIEETRAWQKNLSLKNLQQKGVCLLKLHIGSQRTGMHGRF
LVTFEPRKSIGPSVLPSHGFGPGDIVGLYESEGCSQPNQLCSGVVTHVTQASITVAFDET
HDGLNLESDVLYNIMKLANDVTYKRLTHALNSLNGYRSGPATQLISVLFGYSEPGTLSQQ
NALEWINNGLDSSQQEAVLFALSQKEVAIIHGPPGTGKTTTVVEVILQAVKQGQKVLCCA
PSNVAVDNLVERLAKSKAKVLRLGHPARLLESIQKHSLDAVLAQSDNTNIIADVRKDMDK
AFSQIKKVRDKGQRSSLRREIGELRKELKSREEMAITQILKRASVILATNTGASDYGALK
YLPSEHFDLVVIDECAQALESSCWIALLKARKCILAGDYKQLPPTIKSQNAAAKGLSVSL
MERLIQEYGDSIVRMLTTQYRMNSAIMQWASEQMYQGKLTAHPSVEKHLLRDLAGVALVE
ETNMPLLLVDTAGSGLNEMEDTDEQSKGNQGEVDIVALHMRTLTEAGVKAKDIAVIAPYN
LQVDLLRQKLSNDYPDLEIKSVDGFQGREKEAVLLSLVRSNRKGEVGFLAEDRRINVAVT
RARRQLVVVCDSQTVRNHEFLRSLVDYMSEHGEVRTAFEYLEDLVPENYQRDFKDKQNNI
KVSSTKTKARNQQGERGEKKQNKVSESKIKGNGQSKDEPHLSNNVKSGLPKPKADDQLES
EMKKAEMRQQLLNFLDNQGQTELQFPSSLNSHERLLVHQLCEELELKHVSKGTGKQRHIT
VSKPVAEPEERPEEDSESTKTEIQIPEELSEKESNTQPLKFALDLKSLHLERMRREREKR
EEKIQSKRLETELKDIKGPSTKKNKDVTKGKGKKKAGAVDIAAAATADYDFDALIDAVVK
AESVCGFMKCKASVLTLGQLCVYCNRQYCLSHHIPEVHGCGDKAKAQARMRISKEGVLYA
GSGQKDKSMDPNKKAYLQRKLDSKLKDMASQRKSKSKDKEP
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgaaagtttcgtttccaagtcgcttgaactcttacaagaggagagaggagct
gagatagaagaaaccagggcatggcaaaagaatctgtcactaaaaaatctacaacagaaa
ggagtatgcttgctgaaacttcacattggaagccagaggacaggaatgcacggcagattt
ctggtcacatttgagccccggaaaagtatcggcccttcagttctacccagtcacggtttt
ggacctggtgacattgtgggtctttacgaatcagaaggatgcagccagcctaatcagctt
tgctcaggtgtggtgacgcatgtgacgcaggcatcaataacagttgcttttgatgaaaca
catgatggcctcaacctggaaagtgatgtactatacaatattatgaagcttgcaaatgat
gtaacctataaacgattgactcatgctttaaactctttgaatggctacagaagtggtcct
gccacccaactaattagtgtcctttttggttactctgagcctggaacattgtcacagcag
aatgctttagagtggatcaataatggattagacagttctcagcaggaggctgtgttgttc
gcactctctcagaaagaggttgctatcatacatggaccaccagggacggggaaaaccaca
acggtggttgaagttattctacaggctgtaaaacaaggccagaaggttttgtgctgtgca
ccatccaacgtggcggtggataatttggtggagcgcctggccaagagcaaggctaaggtc
ctgcgactgggacatccagcacgccttctagagtcgatccagaaacattcattggacgca
gtgcttgcacagagcgacaacaccaacatcattgcagatgttcgaaaagacatggataaa
gcctttagtcagataaagaaagtgcgtgataaaggacagagaagcagcctaaggcgtgaa
ataggagagctgcgaaaggaactgaagagcagggaagagatggccatcacccaaatcctg
aaaagggccagtgttattctggcaaccaacactggagctagtgattatggtgcactgaag
tatttgccaagcgagcatttcgacctggtggtgatagatgaatgtgctcaggctctggag
agcagctgttggattgcactgctcaaagcacgcaagtgcatcctggctggagactacaag
cagctgccacccacaattaaatctcagaatgcagctgctaaaggtctgtctgtgagttta
atggagcggctgattcaggagtacggagactccatagttcgaatgctgaccactcagtac
cgtatgaacagtgctatcatgcagtgggcctcagagcagatgtaccaagggaaactgacc
gcacatccttcagtggagaaacatttattgagagacctggctggtgtagctcttgttgag
gagaccaacatgcctctgctcttagttgacactgctggcagtgggctcaatgaaatggag
gacacagatgagcaatcaaaaggcaatcagggtgaagttgacatagtggcacttcacatg
agaaccttgactgaagctggagttaaggccaaagacattgcagtcattgcaccttataac
ctacaggtagatctgctaagacagaagctctcaaatgactatcctgacctggagatcaaa
tctgtagatggctttcaaggcagagaaaaggaggcagtgctgctgtccctggttagatct
aatagaaaaggagaagttggatttcttgcggaggacaggaggatcaacgtggcagtaaca
cgtgccagacgccagcttgtagtggtatgcgattcccagactgtccgaaaccatgaattt
ctcagaagtttggttgactacatgtctgagcacggggaggttcgtactgccttcgagtac
ctagaggacctggtgcctgaaaactaccagcgtgattttaaagacaaacagaataacatt
aaagtatcttccaccaaaacaaaggcaagaaaccaacaaggcgaaaggggtgagaagaag
cagaataaagtttctgagagcaaaatcaaaggaaatggccaatcaaaggatgagccccac
ctcagcaataatgtaaagtcaggccttcccaagccaaaagcagatgatcaacttgagtct
gaaatgaagaaagcagagatgaggcagcagttgcttaactttctggacaaccaaggtcag
acagagcttcagtttccttcctctctgaattcacatgaacgcctgctggtccaccaactc
tgtgaagagctggaactaaagcatgtgagcaagggaacgggaaaacagcgccatatcact
gtttccaaaccagtggcagagccagaggagagaccggaagaggattccgagtccacaaag
acagaaatccagattccagaggaacttagtgaaaaggaatccaacacacaaccactaaag
tttgctctagatttgaaaagcttgcatttggagcgtatgcgccgggagcgagaaaaacgg
gaggagaaaattcagagcaaaagactggagacagagcttaaagacatcaaaggcccatcc
acgaaaaagaacaaagacgtaacaaaaggaaaggggaaaaagaaagcaggggctgtggac
attgctgcagctgctacagctgattatgatttcgatgcactcattgatgctgtggtgaaa
gcagaaagcgtgtgtggcttcatgaagtgtaaagccagtgtgctcacactgggacagctg
tgtgtctactgtaacagacagtactgcctgagtcaccacatacctgaggtccatggatgt
ggagacaaagcaaaggctcaggctcgcatgaggataagcaaagagggagtgctgtatgct
ggaagcggacagaaggacaagtccatggatccaaacaaaaaagcatacctgcaacgcaaa
ctagactctaaactcaaagacatggcatcccaaagaaaatccaaatcaaaagataaagaa
ccctga
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