Ictalurus furcatus (blue catfish): 128606836
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Entry
128606836 CDS
T09387
Symbol
dhx34
Name
(RefSeq) probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128606836 (dhx34)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128606836 (dhx34)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
128606836 (dhx34)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
zf-C2H2_DHX34
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
XAF1_C
AAA_16
Motif
Other DBs
NCBI-GeneID:
128606836
NCBI-ProteinID:
XP_053479282
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All DBs
Position
4:complement(21627141..21682374)
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AA seq
1134 aa
AA seq
DB search
MSESIRGWDWNSPECRARMDEIFFRQHDYIQAKSIEHTEFWAFFERFQRFKAKKETEDSK
PSKSMAELHKTRERDTVDLGLPKEYDARYRINVFVSISDMEDRLGGFHGRRQRNYPTDPS
SQDVTNCRLALLHFLDFTQKQSFCKLVKLQHEQKSLPIFHYRDRFVELVQTHPVVVVAGD
TGCGKSTQVPQYLLASGFNHIACTQPRRIACISLAKRVSFESLNQYGSKVGYQIRFESRR
TSSTKLLFLTEGLLLKQIQHDAVLSQYHVVIVDEVHERHLQCDFLLGVLHSLLQRRPDLR
LVLMSATINIKLFSSYFNNAPVLQVPGRLFPIQVIYQPIPQKEQVSQLEKLDPRPYLRVL
QGIDQRYPPEERGDLLLFLSGVAEISTIMEACQTYAAHTSRWIILPLHSTLSLAQQDKVF
DIAPPGLRKCIIATNIAETSVTIDGVRFVVDSGKVKEMTFDPKAKMQRLQEFWISRASSE
QRKGRAGRTGPGVCYRLYAESDYEAFAPYPVPEIHRVALDLLVLQMMSMGLGDPCSFNFI
DPPAAFSIQTSVRYLKEQGALDAQGELTPIGNLLAKLPVDVVIGKMLVLGSLFNLVEPVL
TVAAALSVQSPFLRNSQHNPDCATARQPLQSDLGDPFTLLSTFNAWVQIKGNREGGSRKW
CKRRGLEEQRLYEMANLRRQFKELLRSHGLVTPESCNVAEDQAQRRKRLTEHQRLHQMKR
EHELKENSRRKVLHLEEVLGKGLSSESDEEAAGSSKKDKDSAAQDIDIQEVKFKLQHDVS
KLQGDACASATLSSQQQALFRLVLCRGLYPQLALPDEHNSARKDSEQVFHTRNKQGVVIH
PTSVFASNLDLLHITESSAEKGQSNGHQLLAFVTLLETNKPYVSNCVRVPALQILLLVAN
SIDSNADCTRLVVDGWLELVISDSVAALKVLSSALIMRDKWDNLLQAKLSQSGLRSTAVL
GLAGPIPSHHDLKKVTEGLVRFLLYTEVSYSLRRLTPLQSQNLYIGPQLNMEVSLPPLFP
ETNAEPDSIKGGLRVTSYFTYNCLCDSKDLYSECLRTFWTCPHCDLHMPFTALEQMQHEA
TCRPLEEQQTEEEPDTVKSGSLSNLTRLYHCNICNKDLTLTSTEILKHKRQHQS
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagagcatccggggctgggactggaatagtccagagtgtcgtgccaggatggat
gagatcttttttcgccagcacgactacattcaggcgaaaagtattgaacatacggagttt
tgggctttctttgagcgctttcagcggtttaaagccaaaaaggagaccgaggactcaaaa
cccagcaaaagtatggcagagttacataagacgcgtgaaagggacacagtggatcttggg
ctcccaaaagaatacgatgcccgatacaggatcaacgtctttgtaagcatcagcgacatg
gaggatcgtctcggaggcttccatggcaggcgacagaggaactacccgaccgacccaagc
agccaggatgtcacaaactgtcgtcttgctctgcttcattttctagacttcactcagaag
cagagcttctgtaaacttgtcaagctgcaacatgagcagaagagcctgcccatcttccac
taccgtgaccggtttgtggagctggtccaaacccacccagtggtggtggtggctggagac
accggttgtgggaagtccacacaggtgccccagtacctgctggcatctggctttaaccat
atagcctgtacccagcctcgccgcattgcctgcatttcccttgctaagagagtgagcttt
gagagtctcaaccaatatggttcaaaggttggctaccagatccgctttgagagcaggcgc
acatcaagcactaaactcctgttcctgactgaaggtctgctcctcaagcagatacaacat
gatgctgtgttatctcagtaccatgtggtgatcgtggatgaggttcacgaaagacacttg
cagtgtgacttcctgttgggtgtgctgcattccttacttcaacgtcggccagacctgcgc
ttagttcttatgtccgccaccatcaacatcaaactcttctccagctacttcaacaatgca
cctgtgctgcaggtgccaggtagactcttccccattcaggtgatatatcaacccatccct
caaaaggaacaggtgtcccaactggagaagctggacccaagaccatacctgcgtgtgctg
cagggcattgaccagcgctatccccctgaggagaggggcgatctgctgctttttcttagt
ggtgtagctgaaatctccactatcatggaggcatgccaaacctacgctgcacacaccagt
cgctggatcatactgcccctgcacagcactttgtcactagcacagcaggataaggtcttt
gacattgctcccccagggttgaggaaatgcatcattgctacaaacatagctgaaacatca
gtgaccattgatggggtgcgctttgtagttgactcaggcaaagtaaaggaaatgactttt
gacccaaaggccaagatgcagagacttcaggagttctggattagccgtgcaagttctgag
cagaggaaaggtcgtgcaggtcgaacaggcccaggagtttgctaccggctctatgctgag
tcagactatgaggcctttgccccttaccctgtccctgagatccatcgagtggctctagac
ttgttagtgctacagatgatgagtatgggtctgggagatccttgttcttttaacttcata
gaccctcctgcagcctttagcattcagacatctgtgaggtatctaaaggaacaaggggca
ctagatgctcagggagaactcacccccattggcaatctgctggccaagctgccagtagat
gtggttattgggaaaatgctagttctaggttcactattcaacctggttgagccagtgttg
actgtagctgcagcactgagtgttcaatcaccatttctgcgcaatagtcagcacaaccca
gattgcgctactgcacgccaacccttgcaaagtgacctgggagaccccttcaccctgctc
agcaccttcaatgcatgggtacagataaaagggaatagggaaggaggctccaggaagtgg
tgcaaaagaagaggactggaggaacagagactgtatgagatggccaacctgagacgacag
ttcaaggaactgttgaggagtcacgggctggtgacaccggagtcgtgcaatgtggctgag
gaccaggcccagcgcaggaagaggctgactgaacatcagagactgcaccaaatgaagagg
gagcatgaattaaaggagaacagccgcaggaaagtgttgcatctggaggaagtcctaggg
aaagggttgtcgtctgagtcagatgaggaggcagcaggatcaagcaagaaggacaaagac
tctgcagcacaggacatagacatacaggaagtgaagttcaaactgcaacatgatgttagc
aagcttcagggagatgcatgtgccagtgcaacgctttcgtctcagcaacaggctcttttc
agactggtgctgtgccgtggcctttacccgcagctggccctgcctgatgaacataactct
gcccgcaaagattcagagcaggtgtttcacactcgtaacaagcaaggtgttgtgattcac
cccaccagtgtttttgccagtaatttggatttgctgcacatcactgagtccagtgctgag
aaggggcagagtaatgggcatcagttgctggcttttgtaactctgcttgaaactaacaaa
ccctatgtgtcaaactgtgtacgggtccctgccctgcagattttgctgctggtggcaaac
tccatagacagcaatgcagactgcacacggctggtggtggatggctggctggagctggtt
ataagtgatagtgtggcagctctcaaagtgctgtcctctgctctcattatgagggacaag
tgggacaatctgctacaggccaagttgagccagtcaggtttgagatctactgctgttcta
gggcttgctggcccaataccatcccatcatgacttaaagaaagtcactgaaggacttgta
cgctttctgctgtacacagaggtgagctacagcctgagaaggcttaccccgctgcagtct
cagaacctgtacatcggacctcagctgaacatggaggtttctctccctccactcttccct
gagacaaacgctgaacctgattcaattaaaggaggtctacgtgtcaccagctacttcacc
tataattgcctctgtgactccaaagacttgtacagtgagtgtttacggacattttggacg
tgccctcactgtgacttgcacatgcccttcactgcactggagcaaatgcagcatgaggcc
acctgtaggccactagaggaacagcagactgaggaggagcctgacacagtaaaatctgga
tcactgtctaatctgactagactctaccactgtaatatctgtaataaagacctaacccta
acctccaccgagatacttaaacacaagcgtcaacaccagtcctga
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