Ictalurus furcatus (blue catfish): 128607031
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Entry
128607031 CDS
T09387
Symbol
dhx36
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128607031 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128607031 (dhx36)
03012 Translation factors [BR:
ifu03012
]
128607031 (dhx36)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128607031 (dhx36)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128607031 (dhx36)
Translation factors [BR:
ifu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
128607031 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
AAA_16
TsaE
Spiralin
PhoH
Adhesin_P1_N
Motif
Other DBs
NCBI-GeneID:
128607031
NCBI-ProteinID:
XP_053479622
LinkDB
All DBs
Position
4:complement(32331914..32370523)
Genome browser
AA seq
1027 aa
AA seq
DB search
MSYGYGRGRGRRGGGGGGGGGGGRGRGGGGGGERWSSDWEARDEHPRGGGGRGRHPPHLK
GREIGLWYAKWGGLKRAEAERKSRAVVQMDESREQHITQLLNSVQREPSRDYGPAVPPYR
QVKPEPSGHSYFDGDDPPEQPQKTVKVAKIESVKVKEEEAEIKTEVKEEIKTEVKEERVD
RDLEYLVQEIDRKPSLDEELKSELQSKRQNAKYLEMLTFREKLPSYSMREELVKLIQANR
VVVVSGETGCGKTTQVTQFILDDYIRRGMGSLCRVVCTQPRRISAISVAERVAAERAESV
GEGKSCGYQIRLQSRLPRKQGSVLYCTTGIILQWLRSDPCLSSISHLVLDEIHERSLHSD
VLLTIVKDLLSHRDDLKVVLMSATLNADKFSKYFDHCPMVHIPGHTFPVKEYLLEDVVEM
LRFRPQQQQDRRPRFRRGFMNGQNVRPEKQEKEAEYKESWPCFARTLGDRFSDGTVDTLE
MMDEDDKINLELIVALIRHIVLNEDDGAILVFLPGWDNISSLNDLLMADQMFKSDKFVII
PLHSLMPTVNQTQVFKRPPAGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNN
ISTMTAEWVSLANAKQRKGRAGRVSPGKCYHLYNGLRASLLDAYQLPEIQRTPLEELCLQ
IKILKLGPIASFLRKTLDPPSDRAIELAITHLMDLNALDRNEELTPLGFHLARLPVEPHI
GKMILFGALLACLDPVLTIAASLSFKDPFFIPRGRKKIADQRRKILSKNTKSDHLTVVNA
FQGWEEAKRRGYRCEREYCWDNFLSANTLQMLQNMKGQFAEHLLAAGFVSSKDPKHLGAN
INSENEKLLKAVIVAGLYPKVAKIRPSPHKKRPIPAKVYTKADGKVCIHPKSVNSEETQF
HYTWLIYHLKMRTTSIFLYDCTEVSPFSLLFFGGDISIQKDKEQETIAVDEWIVFQSPAR
IAHLVKDLKKELDLLLEEKIKRPRPVDWSDRASKDCAVISAIVDLITTQETATSSQEPYR
KSHQHWD
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggctacggaagaggaaggggccggagaggaggaggaggaggcggtggtggt
ggtggaggcagaggcagaggaggaggaggaggaggagagcggtggagctccgactgggaa
gcccgggatgagcatccccgaggcggcggaggccgcgggagacacccgccgcacctgaaa
ggcagagagatcggactgtggtacgccaaatggggaggactgaaacgtgcagaggccgag
aggaagtcgagagccgtagttcagatggacgagtcgagagagcagcacatcacacagctg
ctcaattcggtgcagagagaaccgtcccgtgactacgggccggccgtcccaccgtaccgg
caggtgaagccggaaccgagcggccacagctactttgatggcgacgatcctccagaacag
ccgcagaaaacggtgaaagtggctaaaatcgagtcggtgaaggtgaaggaagaggaggcg
gagataaagaccgaggtaaaagaggagataaagaccgaggtaaaagaggagcgcgtcgat
cgcgatctggaatacctggtgcaggagatcgatcgaaagccttcactggatgaggagctg
aaaagcgagcttcagagcaagagacagaatgctaaatatctggaaatgctgacgtttcgg
gagaagctgccttcatacagcatgagagaggagctggtgaagctgatccaggccaaccgt
gtggtggtggtgagcggagaaaccggctgcggcaaaaccacgcaggtcacgcagttcatc
ctggacgactacatccggcgcggcatgggctcgctctgcagggtggtgtgcacgcagccc
cgacgcatcagcgccatatcggtggccgagagggtggcggcggagagggcggagtctgtc
ggagaggggaagtcctgcggatatcagatccgtctgcagagccggttgccacggaaacaa
ggctcggtgctgtattgtacgacgggaattattcttcagtggctgcgctcggatccgtgt
ttgtcgagcatcagtcacctggttctagacgagatccacgagcgcagcctgcactcagac
gtcctcctcaccatcgtcaaggacctgctgagccacagagacgacctcaaggtcgtgctc
atgagcgccacgctgaacgccgacaagttcagcaagtacttcgatcactgccccatggtc
cacatcccgggtcacaccttccccgtgaaagagtacctgctggaggatgtggtcgagatg
ctcaggttccggccgcagcagcagcaggatcgtcgtccccgcttcaggagagggttcatg
aacggccaaaacgtgcgtcccgagaagcaggagaaagaagcagaatacaaagagagctgg
ccgtgtttcgctcgcacactcggagacaggttctctgacggcaccgtcgacaccctggag
atgatggacgaggatgacaagatcaacctggagctgattgtagcactcatccgccacatc
gtgctgaacgaagacgacggagctatcttggtgttcctacccggctgggacaacatcagc
agcctgaacgacctgctcatggccgaccagatgtttaaatctgataagttcgtgatcatt
ccactgcactcgctgatgcccacggtcaaccagacgcaggtttttaaaaggccacccgcc
ggagtccggaagatcgtgattgcaaccaacatagcagaaaccagtatcactatagacgac
gtggtgtacgtgatcgatggaggcaaaattaaggaaactcacttcgacacgcagaacaac
atcagtacgatgacggcagaatgggtgagcctcgccaacgccaagcagaggaaggggcgc
gccggcagggtgtctccaggtaaatgctatcacctgtataacggcttgagggcgagtctg
ctggacgcctaccagctccctgagatccagcgcacaccgctcgaggagctctgtctgcag
attaaaatcctgaagttgggcccaatcgcatcattcctgaggaagactctggaccctccg
tcagacagagccatcgagctggctatcactcacttaatggatctgaatgcattggaccgg
aatgaagagttgaccccattgggtttccacctggcccgtctgcccgtggagccacacatc
ggaaagatgattctgttcggcgctctgctcgcctgcctggaccccgtgctgaccatagca
gctagccttagctttaaagacccgttcttcataccaaggggaaggaaaaaaatcgccgac
caaagaagaaaaatcctgtccaaaaacaccaagagtgaccacctgactgtagtcaacgcc
ttccagggctgggaggaagcgaagaggcggggctacaggtgcgagcgggaatactgctgg
gacaacttcctgtcagccaacacgctgcagatgttacagaatatgaaaggacagtttgcg
gagcatctcttggccgctgggtttgtgagcagtaaagacccaaaacatctcggcgccaac
atcaactccgaaaacgagaagctcctgaaggcagtcatcgtggccggcttgtatcccaaa
gtggccaagatccggccgagcccgcacaagaagagacccataccagcgaaggtgtacacc
aaagctgacgggaaggtctgcatacacccgaaatctgtcaactccgaggagacgcagttc
cactacacctggctcatctatcacttgaagatgagaaccaccagtatctttctgtacgac
tgcacagaggtgtctccattctcgctcctcttcttcgggggtgatatctccatccagaag
gacaaagagcaggagaccatcgccgtggacgaatggatcgtctttcagtctccggctcgc
atcgctcacctggtcaaggacctgaagaaggagctggatctgctgctggaggagaaaatc
aagcggccccgccccgtggactggagcgaccgcgcctcgaaagactgcgccgtgatctcg
gccatcgtcgacctcatcaccacgcaggagaccgcgacgtcttcgcaagagccgtacagg
aaaagccaccagcactgggactag
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