Ictalurus furcatus (blue catfish): 128607522
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Entry
128607522 CDS
T09387
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ifu04131
]
128607522 (vps13a)
Membrane trafficking [BR:
ifu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
128607522 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
128607522
NCBI-ProteinID:
XP_053480403
LinkDB
All DBs
Position
5:5938174..5986033
Genome browser
AA seq
3238 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDCSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVKAG
HIGRLELKIPWKNLYTQSVEATLDEVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKIKAAEQENPKTEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDSITNPNSPLSFGVSLQ
NLSLQTADANWKPCLLDEKAKLFFKLVRLDNLFAYWNVNSELYSIHSASEALRCLQHNMA
VQNSIPHDYQFIFRPISANAKLRMNPRSDVDFSSPKVDLVVNLPEVAVELSRPQYVSILE
LLGSVDMMSRNLPYRKYRPDVPVHTNAYQWWRYVITGILEVNVKPSLHMWSWKRIKRHRQ
QVKQCKELYKTKITNKKPAETLLKKLEETEKCLDIFNITLARQQAEMEASKAGLRIYRPG
LKMEEEQSQGWFGWMWNWSGDSSAQTKEVKPGGFDTLMTPEEKAKLCTAIGYSETAVNPN
LPKDFEDVKVRFQLVSMSVSIKESKEKPEIIKLSVIDLRATLTQRPSAQAIKITAQLSSF
EVTGVSRNSVAPTLLSPRRVVEEDKPLLSLMFETNPLDAKADQRLHVESQPLEIIYDAMT
VNNVSGFFMPPDDLQLDELTNATRMKLEQFRDRTSTGLMYIIETQKVLDLKINLMASYVI
VPQLGFYDPKHNLIILDLGHFQMSSQSRANLPQLSVGKNTIEDIMSRAYDSFDVQLTSLQ
LLYSKPDGDWEKARKLRQSSLHILEPVDMKVVFSRAMVVTDSRMPKFKIFGELRLLSLRI
SDDKVRGILELLDSIPLPESRPAPRTTGPQTTPKVLKPRDTPQLTPRKPAMVDLRSSIIF
DSGSEEDLFFDAPSSPIEDLPFFEANSGSLEQSTSVKRKTMVKRDPKKNMTEFLLNFEIN
TLSIQLFRLSANLEVPVLRLEIEGLGTELKVRTFDMTSYTFLREICLECSEYMDGEDKKV
HLITTLDNTEDDLLTLEYIKADKNAPDFKAVYKNTEQLIKVNFSSLDVHLHTEALLNSMN
FLNSLLPPAKKGEEPVEPPAPRQDDEGEGDSEEEKKEEESTISKKSSTKKSKFEDVVNLH
IRADLSCLKVFIRGEKARISEISIEGLVSEVQMKKKSVEILANLKNIVILDCDKDALYKK
AVSVADKDVFGFHMVNYVDATDGDAYTDMQIVDTSVTLTVGCIQVIFVNKFVSSILAFIN
NFQEAKDALAEVTAQAAEKAATGVLELAEKSTRVSLNVNIKAPVVFLPQSSVSTNVIVAD
LGLVTVKNYFEIVPSRTHTKIPPILDIMSVALSELKMYRTTFKDGRFQSEIQLLKPVNMD
LSIKRNLSAAWYHSIPDNQINAHLRPMSLILSQEDLTVVLRTLNENLSETSDAVPAPKSS
DKAETMSNKDSQGSGAGTTVVTAAVVEGQKTAKLKSTLKLHFKFDSMTLVLYSSSGSETA
LLDSHDEQLKLAEFTLGTISTAVHTFSDGSMKASVKLAECLLDDKRKRVNMITSRMMAMR
KGAEKNVMVEVNYRQGRDGTSLDTVVQDLYLCASMEFLLTVADVFLKAMDQGFSSHPKSS
KPASTSTKDSTAPAQSALAKTEMNVMVKNPEIVFVADLSRADAPALVMTTQCELTMKNDS
AGQLMTAGITDLKVVACPFVRGTDESNVTTVLQPCQVFFKQTQSPTQPQKIELSINSLTL
KVSPIIINTVITIQSALTPAAETPEELESPVPPDLWERRDWRDLKLWFLEEEGEEDAKSV
APLVPQGESLQLKIISICLTLEAGVGHRTVPMLLAKSSFHGDVKNWSTLINLQCHLDMEV
NYYNEILGVWEPLLEPLEDEAKDGFRPWTLELKMKKKPVKRSGISDEVDYTVPDYKTVIG
INSKDQLNITLSKCGLNMLSNLGTAFAEAAKQTAECFQKDQAPFVVKNQLGLPVAVLYSE
VFKPIGKKCKDRMVELQDGESLNMDYTLTAADTDQFSAMTSLSSENYIQPTPVGHTSASV
IPLIKVGRGMYNVMHLESGVTRFFICQIYSNEGNKFVKIRSPFLIINHFSLPFRVFEGST
CLGISSPTEEFCVPLGSYRSELTLQPVIEGDEQYEHSESFSYEHLSQKLDECVEKTCRRR
GDSAQMFKVNMVPVRDTVISDSTQEEFDQPYVLHLWPTVLLRNLLPYPITYSLMVSGSPT
PTMLKEGHSSQLHTAIMDHSSLELKLLGYLQQDWEALYHLRSDHDEIGFVTFHSRHLDED
VDGEGTKTELDIAVHVKKEVGQVVVAIHSPYWMVNKTGRLLQYKADDIHRKHPKDYDMPL
LFSFKPRNFLQNNKVRLMISDSELSDDFSIDTVGSYGDVKCKGRAKDYLVGVKIDTSSFS
LTRLVTFLPFYMLVNKTKHVIRVCEEGQDDWTEAKPGETATPFWPERDSKKLRVKVDGCQ
STAQAIAFHKPENCLLLHLDNTLGGIIVDVNLTEHSAAIQFSDYHDGAAPFLIINHTKEN
TLEFHQSCKERRPSTWVPDGTFALGEDRQSSCSQKLEMDELGPGQAVYYTWAEPTGSRVL
RWSWGPYSGELKNEQDLLMDMNDEGKLYVISFYEGLQRVALFTTERRVYKLLCESERVEL
AEQEISLSLQDMGISLVNNSTSQEVAYIGITSSDVVWETKPKKKRRWKVMSGKDAEMLEQ
HYKAYIESNPLDHSILDLENGYQVSLTPNGLEMRILQPYDAPLRRNFLPAVKIEYSVSAR
QKAYRVQINRVQIQNQLPGAIFPFVFYPVKPPKSVRMDSEAKPFTDLSLITRAAGHSDIL
RIKYFKVLIQEMDLRLDLGFLYAILDLFTAENAATVTSEQEVELFEKDIEYLKTGLNQVS
ATDTSPTSLYEYFHISPIKLHLSFSLSSGGEDGNKEKRETEVIPVQSLNLLLKSIGATLT
DVQDVVFKLAFFELTFQFRTTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGL
SEGVEAFFYEPYQGAIQGPEEFMEGMALGMKALVGGAVGGLAGAASRITGAMAKGVAAMT
MDEEYQQKRREAMNKQPSGLKEGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFK
GVGKGLVGAVARPTGGIIDMASSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKERE
GIGSQMLQKIENGRFAKYRYFAHAKVNESDFLMITKRGIFFVTKGTFGQLTCEWQYLFDE
FTKDPTIVEDRRLRIEAKERVKSVFHAKEFGKIINFKTPEIAKWVLTKLQDARESLQK
NT seq
9717 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcgctggtggtggacgtcctgaacaggtttctcggggactacgtggtg
aacctcgactgctcccaactcaagctgggcatctggggaggtgatgcggttctgcggaat
ctggaaataaaggaaaatgctctgagtcagctggacattccttttaaagtcaaggcgggg
catataggccgcctggaactgaagatcccatggaagaatttgtatacgcagtcagtggag
gcgacactcgacgaggtctacttgctcatcgtccccactgccagtataaagtacgatgca
gaaaaggaagagaagcagctgcaggaggctcggcagagggagcttcagcggatcgaggaa
accaaaataaaagcagcagaacaagaaaatccgaagacggaaaagcaggacaccttcgtg
gagaaactggtcacgcaggtgattaaaaacctgcaagtgaaaatttccaatattcacatt
cgctatgaagatagcatcaccaatccgaattcacctctctcattcggagtgtctctccaa
aacctcagccttcagacagcagatgcgaactggaaaccctgcctgttggatgagaaagcc
aagctgtttttcaagcttgtccgtctggataatctcttcgcatattggaacgttaactca
gagctctactccatccactctgctagtgaagccctgcgatgcctgcagcacaacatggct
gtccagaactccatccctcatgactatcagtttattttccgtccaatatcggccaacgct
aagcttcgcatgaaccctcgctcggacgtggacttctcctcgccgaaggtggatctggtc
gtcaacctgcctgaagtggctgtggagctgagcagaccacagtacgtcagcattctggag
cttttgggctccgtggatatgatgtcacgcaatcttccgtacaggaagtatcgcccagat
gtgcctgtccacaccaacgcgtaccagtggtggcgttacgtcatcacgggcatcttggag
gtgaacgtaaaaccctccctgcacatgtggtcttggaaacgcatcaaacggcaccgacaa
caagtaaagcagtgcaaagagctttataagaccaagatcaccaacaagaagcctgcagag
accctgctaaagaaactggaggagacagagaaatgcctggatatttttaacatcacgctc
gcgagacaacaagccgagatggaggcatctaaagctggccttcgcatctaccgaccaggg
ttaaagatggaggaggagcagtcgcagggctggttcggctggatgtggaactggtccgga
gacagctctgctcagaccaaagaggtcaaacctggaggtttcgacacactgatgactcca
gaagagaaagccaaactctgcactgccatcggatacagcgaaacggccgtcaatcctaac
ctgccgaaagactttgaggacgtgaaggttcggttccagttggtgagcatgtccgtgtcg
atcaaagagagcaaagaaaagccagagattatcaaactgtccgtcatcgacctgagagcc
acgctgacgcagagaccgtccgctcaggctataaagatcacagctcagttgtcgtcgttt
gaggtaaccggtgtctcgaggaacagcgtcgctcccacgctgctttctcctcgacgtgtg
gtggaggaagacaagcctctgctcagcctaatgttcgagaccaacccactggacgccaag
gcagatcagagactgcacgtggaatcgcagccactggagatcatctacgacgcaatgacg
gtgaataacgtgtcagggttcttcatgcctccagatgacctgcagctggacgaactgact
aacgccacccgcatgaagctggagcaattcagagacagaacctcaaccggactcatgtac
atcatcgagacacagaaagttcttgacctgaagatcaacctgatggcctcctatgtgatc
gtgccccaactgggcttctatgaccccaagcacaaccttatcattctggatctgggacac
tttcagatgtcgagtcagagcagagccaatttgccacagctctcagtgggaaagaacacc
atcgaggacatcatgtctcgagcctacgacagcttcgatgtccaactcaccagcctgcag
ttgttgtattcgaaaccagacggggactgggagaaggctcggaagctgagacagtcttcc
ctccacattctggagcccgtcgacatgaaagtggttttcagcagagccatggtggtcact
gactcaaggatgccaaagtttaagatatttggtgagcttcgtctgctctctcttcgcatc
tccgatgacaaagtccgcggcatcctggagttgctcgacagcattccactgcctgagagt
cggcccgcgcctcggactaccggtccacaaactacacccaaggttctcaagccaagagac
acacctcagctgacccccagaaaaccagccatggttgacctgcgctcctcgataatattt
gactcaggatcggaggaggatttgttctttgacgcacccagctcaccaattgaggatctg
ccattctttgaggccaactctggctccctcgagcaatcgacctccgtaaaaaggaaaaca
atggtgaagcgtgaccccaagaagaacatgaccgagttcctgctgaatttcgagataaac
acgttgtccatccagctgttccgcctttcagcaaacctggaggttcccgttctgcgtctg
gaaatcgagggtctgggcacggagctcaaagtgcgcacgtttgatatgacttcctacact
tttctgcgggaaatctgcctggagtgctcagagtacatggatggagaagacaagaaggtt
cacctcatcaccactctggataacaccgaggacgatctgctcacgctggagtacattaag
gcggacaagaacgctccggattttaaagcggtgtataaaaacaccgagcagctcatcaag
gtaaacttctcctccttggatgtgcacctccacaccgaggccctcctcaactctatgaac
ttcctgaacagcctcctccctcctgcaaagaagggggaggagcctgttgagccgcctgcg
ccccgacaagacgacgagggagagggagacagcgaggaggagaagaaagaggaggagtcc
accattagcaagaaatcctctacaaagaagtcaaagtttgaggatgtggtgaatttgcac
atcagagcagatctgtcctgtctgaaggtcttcatcagaggagaaaaagccagaatctct
gagatcagtatagaaggtctggtgtctgaagtacagatgaaaaagaaatccgttgagatt
ctagctaacctgaagaatattgtcatattggactgcgacaaagatgctctgtacaaaaag
gcagtatctgtagcggataaggacgtgtttggtttccacatggtgaactacgtggacgct
acagacggagacgcctacacagacatgcagatagtggacaccagcgtcactctgaccgtg
ggctgtatccaggtcatcttcgtcaacaagttcgtctcctcaatactggccttcatcaac
aacttccaggaagctaaggatgctctagcagaggtcacggcgcaggcggcagagaaagcg
gccacgggcgtgttggagcttgccgagaaaagcactcgcgtttcactgaacgtgaacatc
aaagcgcctgtcgttttcctcccgcaatcctccgtttccactaacgtcatcgtggccgac
ctgggtttggtgacggtcaagaactactttgaaatcgtgccctcgagaacacacaccaag
attcctcccatcctggacatcatgagtgtggctctgagtgagctgaagatgtacagaacc
acatttaaggatggcaggttccagagtgagattcagttactgaagcctgtaaacatggac
ctgtcaatcaagcgcaatctctctgccgcctggtatcacagcatccctgacaaccagatc
aacgcacacctcaggcccatgagtctgatactgagtcaggaggacctaactgtggttttg
aggactctgaatgagaacctgtctgagacttcggacgcagttcctgctcctaaaagttct
gataaggcagagactatgtctaacaaagattcccaaggatctggagcagggaccacagtg
gtaacagcagcagtggtggagggacagaagactgccaaactgaaaagcacacttaaactc
cacttcaagttcgattcaatgaccctggttctctacagctcaagtggaagcgagactgcg
ttgctggactctcatgacgaacagctgaagctggcggagttcaccctgggcaccatctcc
accgcagtgcatacgttttcagacggctccatgaaggcttctgtcaaactcgccgaatgc
ctgctggacgataagaggaagagggtcaacatgatcacgtccaggatgatggcaatgcga
aagggtgctgagaagaacgtcatggtggaggtgaactatcgccagggccgggatgggacc
agcctcgacactgtagttcaggatctttacctctgcgccagcatggagttcctgctcacg
gtggctgatgtctttctgaaagccatggatcagggcttctccagccatcccaagagcagc
aaaccagcatccacctccaccaaagattcgacagctcctgctcagtctgcgttggcaaag
acggaaatgaacgtgatggtgaagaaccccgagatcgtgttcgtggccgatctgagccgc
gccgacgcccccgccctcgtcatgaccacgcagtgcgagctgacgatgaagaacgactct
gccggtcagctcatgacagccggcataactgacctgaaggtggtagcatgcccgtttgtg
cgtggcacagacgagagcaacgtcaccacggtgctgcagccgtgccaggtgttcttcaaa
caaacgcagtcgcctactcagcctcaaaaaatagagctctccatcaactccctcacccta
aaggtgtcacccatcattataaacacagtcatcactatccagtcagcgctgacccctgca
gccgagacccctgaggagttggagagcccggtgcctcctgacttgtgggagcgcagggac
tggcgggacctcaaactctggttcctggaagaggaaggagaagaagacgcaaagtccgtg
gccccgctcgtcccccagggcgagtcactacagcttaagattatctccatttgccttact
ctagaggcaggtgtgggtcatcgcaccgtccccatgctgcttgccaaatcctcttttcat
ggagacgtgaagaactggagcactctaatcaacctgcagtgccacctcgacatggaggtt
aattattataacgagattttgggagtatgggagccacttttggagccacttgaagacgaa
gctaaagatggtttcagaccctggacactggaactaaagatgaagaaaaagccagtgaag
cggtccggtatttccgacgaggtggactacaccgtgccagattacaaaaccgtaatcggc
atcaatagcaaagaccagctgaatattactctctccaaatgcggactgaacatgctcagt
aatttaggaacggcatttgcggaagctgcgaagcagacggcggagtgtttccaaaaggac
caggctccattcgtggtgaagaatcagttaggtttaccagtggctgttctgtacagcgaa
gtgtttaagcctatcgggaagaagtgtaaagaccgcatggtggagctgcaggacggagag
agcttaaacatggactacaccctcactgctgcagacaccgatcagttctcagcgatgacc
agcctaagcagcgaaaactacatccagcctacccctgtcggccacacctccgccagcgtc
atcccgctaatcaaagtgggccgtggcatgtacaacgtcatgcacctggagtctggggtc
acgcgcttcttcatctgccagatttactccaacgagggcaacaagtttgtcaagatccgg
tcacctttcctgatcattaatcacttttcgctgccattccgggtgttcgagggatccacg
tgtctgggcatctcttcacctactgaggagttctgcgtccctctcggctcctacagatcg
gagctcaccctgcagcccgtaatcgagggagacgagcagtacgagcactccgagagcttc
agctacgaacacctcagtcagaaactcgacgaatgcgtggagaagacgtgccgtcggcgt
ggcgactctgcgcaaatgttcaaggtcaacatggttcccgttcgggacaccgtgatttcc
gacagcactcaggaggagttcgaccaaccatacgtccttcatctgtggcctaccgtgctt
ctccggaaccttctgccctacccgatcacctacagcttaatggtcagcggaagccccacc
cccacaatgctgaaggaaggccactcgtcccagcttcacacggccatcatggaccactcg
agtctggagctgaaactcctcggctacctgcaacaggactgggaggccctgtaccacctc
cgctccgaccacgacgagatcggtttcgttacgttccactcgcgccatttagatgaggac
gtagacggcgagggcacgaagaccgagctcgatattgctgttcacgtgaagaaggaagtg
ggccaagtagtggtagccatccattctccttattggatggtgaacaagacgggcaggctg
ctgcagtataaagccgacgacatccatcgcaagcatcccaaagattacgacatgcccctg
ctgttctcttttaaaccacgcaactttctgcagaacaacaaggtccgcttgatgatttca
gacagcgagctgtcagacgacttctcgatagacacagtcggtagttatggtgacgtcaaa
tgtaaaggaagggccaaagattacctagtgggggtgaagattgacactagcagtttcagt
ctgacacgcctggtgacgttcctgcccttctacatgcttgtgaacaaaacgaagcatgta
atccgagtgtgcgaagagggacaggatgactggactgaggcaaaacctggagagaccgcc
actccattttggccagagagggattcaaagaagctcagagtgaaggtggacggctgtcag
tcgactgctcaagccatcgccttccataaacccgagaactgcctcctactgcaccttgac
aacaccctgggtggtatcatcgtcgacgtgaacttgactgagcattcggctgcaatccag
ttctctgattaccacgatggcgcagctccttttcttatcatcaaccacaccaaggaaaac
acactggagttccaccagagctgcaaggagcgtagaccctctacttgggttccagatgga
acctttgctttgggggaggacagacagtccagctgctctcagaagctggagatggacgag
ctgggtccaggccaggccgtctactacacatgggccgagcccacaggatctcgagttctc
cgatggagctggggaccctacagtggtgagctaaagaatgagcaggacctgctgatggac
atgaacgatgagggaaagctgtacgtcatctcgttttatgagggccttcagcgggtggcg
ttgttcaccacagagcggcgtgtctacaagctgctgtgtgagagcgagagggtggagtta
gccgaacaggaaattagcctctcgctgcaggatatgggcatctcactggtcaacaacagc
accagccaggaggtggcctacatcggtatcaccagctctgacgtggtgtgggagaccaag
ccgaagaagaagagacgctggaaggttatgagcggaaaagacgccgagatgttagagcag
cactacaaagcttatatagagagcaacccattggatcacagcatcctagacctggagaac
ggctaccaggtgagtctgactccgaacggtttggaaatgaggatactgcagccttacgac
gcacctctccgaaggaactttcttccagccgtgaagatcgagtacagcgtctcggccaga
cagaaagcgtaccgcgtgcagattaacagggttcagatccagaatcagcttcctggagcc
attttcccgtttgtgttctaccctgtcaaacctcccaaatcagtcagaatggactcggag
gcaaaaccgttcactgacctcagcctcatcacgagagcagcaggacactcagacatccta
cgcatcaagtattttaaggttttgattcaggaaatggacctacgtttggacctaggcttc
ctgtacgccattttggatctgtttaccgctgagaacgctgccaccgtcacgtcggaacag
gaggtggagctgtttgagaaggacattgagtatttaaagacaggactgaaccaagtgtcc
gcgacagacacgtcccccaccagcctttacgagtacttccacatctctcccattaagctc
catctgagcttctctctgagttctggcggtgaggatgggaacaaggagaagagggagact
gaggtgattcctgtgcagtcccttaaccttctgctaaagagtatcggtgcaacgctgacc
gacgtccaggacgtcgtcttcaagctggcgttctttgagctgactttccagttccgtacc
acacagcagctccaatgggaagtcatccgtcattactccaaacaggctatcaagcaaatg
tacgtactggtgctggggttagacgtccttggaaaccccttcggtctgatccggggtttg
tcagagggagttgaggccttcttttatgagccatatcagggagcgattcagggtccggag
gagttcatggagggtatggctttgggtatgaaggctctggttggaggtgcagtagggggt
ttagccggagcagcgtctcgtatcacgggtgcgatggctaaaggcgtggctgccatgacg
atggatgaggagtatcagcagaaaaggagagaggccatgaacaagcagccgagcggtttg
aaagagggtctgaccagaggagggaaaggactcgtctctggttttgtgagtggtattaca
ggcatcgttactaaacctatcaaaggtgctcagaaggagggagcagcaggtttctttaag
ggtgtaggcaaaggtcttgtaggagccgtggcccgaccaacagggggcatcattgacatg
gcgagcagcaccttccagggcatcaagagagcggcagaaacatctcaggatgtggagagt
ttgcgaccgccgcgattcattcacgaggacggcgtcatcagaccgtataaagagagagag
ggcatcggcagccagatgttacagaaaattgaaaatggacggtttgcgaagtacagatac
ttcgctcatgccaaggtgaacgagtcagatttcctgatgatcaccaaaaggggcatattt
tttgttaccaagggcacgtttgggcagttgacgtgcgagtggcagtatctgtttgatgag
ttcaccaaagatcccacgattgtagaagacagaagactgcgcattgaggcaaaggaaagg
gtgaagtctgtgtttcatgccaaagagtttgggaagattatcaacttcaagactccagaa
atagccaagtgggttctgaccaagcttcaggatgccagggaaagccttcagaaataa
DBGET
integrated database retrieval system
