Ictalurus furcatus (blue catfish): 128607548
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Entry
128607548 CDS
T09387
Name
(RefSeq) embryonic polyadenylate-binding protein B-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03015
mRNA surveillance pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128607548
09123 Folding, sorting and degradation
03018 RNA degradation
128607548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128607548
03041 Spliceosome [BR:
ifu03041
]
128607548
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128607548
mRNA cycle factors
Stress granule specific factors
128607548
Spliceosome [BR:
ifu03041
]
Complex C
Other components
Complex C specific factors
128607548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
128607548
NCBI-ProteinID:
XP_053480457
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All DBs
Position
5:complement(6460781..6476573)
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AA seq
624 aa
AA seq
DB search
MNSSGPVYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINYQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPCLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAKRAIETMNGMLLNDRKVFVGHFKSRKERE
AEFGAKAMEFTNVYIKNFGDDFDNEKLRNIFSEFGRTLSVRVMTDEKGRSRGFGFVNYEN
HEDAQKAVAEMNGKELNGRVLYVGRAQKRLERQSELKRRFEQIKQERLNRYQGVNLYVKN
LDDGIDDDKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLASVRAIPGPAMPTYQQSSGYYMPSIPQPQGRAFY
NTVPNLRPAPRFAAQAPRPQAPYSAQTMRPAMPRRTSTPISTVRQASTQAPGVNTQRMAH
IGTQTAGGRTVGGPMVRGVSQYKYSSGVRNVQQVITVPTSIPQQMVPSAVMEPAVHIKGQ
EPLTPSMLAAAPLLEQKQLLGERLYPLIHALHPNLAGKITGMLLEIDNSELLLMLESPES
LQTKVEEAVAVLQAHQAKEASPKK
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtgggccggtgtaccctttggcctcgctctatgtgggcgacctgcatcct
gatgtcacggaggccatgctatatcaaaagttctcccctgcaggacccatcatgtccatc
cgcgtgtgccgggatatcatcacccgcaggtccctcggttatgcctacatcaattatcag
cagcctgctgacgctgaatgtgctctggacacgatgaactatgaagtgataaagggtcgt
cccattaggatcatgtggtcgcagcgagacccttgtctgaggaagtctggagtggggaac
atcttcatcaagaacatggacgagtcgatcgacaacaaggcgctttatgacaccttctct
gcctttggcaacattttgtcatgtaaggtggtatgtgacgaaaatggctcgaaaggttat
ggatttgtgcactttgagacacaggaggcagcgaaacgagccattgaaaccatgaacggc
atgctcctgaatgatcgcaaagtttttgtcggacattttaaatctcgtaaagagcgggag
gcagagtttggcgcaaaggccatggagttcaccaatgtttacatcaagaactttggagac
gattttgacaatgagaagctacgcaatatcttctctgaatttggtaggaccctgagtgtc
cgtgtgatgactgatgaaaaggggcgttctcgtggctttggctttgtgaactatgaaaac
cacgaggatgcacagaaagcagtagctgagatgaacggaaaggaattgaacggacgagtt
ctgtatgtgggccgtgctcagaagagactggagagacagtccgaactcaaacgcaggttc
gagcaaatcaagcaagaacgcttaaaccgataccagggggtgaatctgtacgtgaagaat
ctggatgacggcattgatgatgacaaactgagaaaagagtttgccccctatggcatgatt
accagtgctaaggtgatgactgagggaggtcacagtaaaggctttggcttcgtttgtttc
tcctctcctgaggaggccactaaagctgtgacagagatgaatggccggatcgtcagcact
aagcctctgtatgtggccctggcccaaaggaaagaggagcgcaaggccatactcaccaac
cagtacatgcagagactggccagtgtgagagccattcctggccctgccatgcctacttac
cagcagagttctggctactacatgccttccatacctcagcctcagggacgtgccttctac
aacactgtaccaaatctacgaccagcaccacgctttgctgcccaagccccaagaccacag
gctccttactcggctcagacaatgagaccagcaatgccacgcaggacctccacccccatc
agcactgtgcgccaagcctccacccaggctccaggtgtgaacacccagagaatggcgcac
atcgggactcagacagcaggtgggcgaactgtgggagggcctatggtgaggggcgtctct
caatacaaatactcaagcggggttcgaaatgttcaacaggtcatcactgtaccaacttct
attccacagcagatggtgccttctgcagttatggagcctgcagttcatataaaaggtcaa
gagccccttactccatcaatgttggcagccgcaccccttttggagcagaaacaactactg
ggtgaacgtctgtatccactgatccatgccctgcatccgaacctcgcaggcaagatcact
ggcatgctgctcgaaatagataattctgaacttctactcatgctagagtctccagagtca
ctgcaaaccaaggttgaggaggcagtggctgttcttcaagctcatcaagcaaaggaagcc
tcacctaagaaatag
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