Ictalurus furcatus (blue catfish): 128607952
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Entry
128607952 CDS
T09387
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04510
Focal adhesion
ifu04512
ECM-receptor interaction
ifu04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128607952 (col2a1a)
04518 Integrin signaling
128607952 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128607952 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ifu00536
]
128607952 (col2a1a)
Glycosaminoglycan binding proteins [BR:
ifu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128607952 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
128607952
NCBI-ProteinID:
XP_053481229
LinkDB
All DBs
Position
5:complement(22083632..22110306)
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AA seq
1490 aa
AA seq
DB search
MFKIVDSRTVLLLVATQCILLALVRCQQEDDQEELGGCIQDGQHFEDRAVWKPEACRVCV
CDSGSVLCDEVICEELRDCNNPIIPPGECCPICPADQDQTSETFGAKGQKGEPGDIANVL
GPRGPAGPMGPPGEQGPRGDRGPKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNPPGLGG
NFAAQMAGGFDEKAGGANLGVMQGPMGPMGPRGPPGPSGAPGVQGFPGSPGEAGEPGPSG
PMGPRGPPGPPGKSGSDGENGKPGKPGDRGPTGPQGARGFPGTPGLPGIKGHRGHPGLDG
TKGETGAAGAKGESGSPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGAPGSKGEAGPTGARGAEGAQGSRGEAGTPGSPGPAGASGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGESGPKGERGVAG
PQGAPGPIGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLSGAKGAPGDRGVPG
LSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGGNGEPGKPGEKGLVGSSGPRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPPGFQGLPGPSGPPGEGGKPGDQGVPGEGGAPGVVGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPAGAVGALGPPGLQGMPGERGIAGIAGPKGDRGDSGEKGPEG
APGKDGTRGLTGPIGPPGPSGPNGAKGETGAIGPTGAAGARGAPGDRGEVGPPGPAGFAG
PPGSDGQPGIKGEQGESGQKGDAGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGVTG
FPGAAGRVGPPGPNGNPGPAGPVGPAGKDGPKGVRGDAGPPGRPGDAGLRGPPGLPGEKG
EAGEDGPPGPDGPTGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAHGIAGERG
PPGPVGPPGISGPSGEPGREGNPGSDGPPGRDGAPGVKGERGNTGPIGAPGAPGAPGSPG
PVGPVGKQGDRGENGPQGPSGPPGPAGARGMAGPQGPRGDKGESGEAGERGQKGHRGFTG
LQGLPGPPGAPGDQGAAGPAGPSGAKGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGESG
PAGPPGNTGPPGPPGPPGPGIDMAAFAGLGQPEKGPDPMRYMRADEASNNLRQHDVEVDA
TLKSINSQIEDIRSPDGSRKNPARSCRDLKLCHPDWKSGDYWVDPNLGCTADAIKVFCNM
ETGETCVKPTTSSIPRKNWWSAKSKGQKHVWFGENMGGGFHFSYGEKIPTPNVASIQMNF
LRLLSSEASQSITYHCKNSVAYMDEATGNLKKALLLQGSNDVEIRAEGNSRFTYGVLEDG
CKKHTGQWGKTVIEYKTQKTSRLPIVDIAPLDIGGANQEFGVDIGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaattgtggactcacggactgtcctgctacttgtagcgacacaatgtattttg
ctagcccttgtcagatgtcaacaggaagatgaccaggaggagttaggcggctgcatccaa
gatggccagcatttcgaggaccgtgcagtgtggaaacctgaagcgtgtcgggtctgtgtg
tgtgactcggggtcagtgctgtgtgatgaggtcatctgcgaggagctgagggattgcaac
aatcccatcattccacccggagagtgctgccccatctgccctgctgaccaagaccagact
agcgagacctttggtgcaaagggacaaaaaggagaacctggcgatattgcaaatgttcta
ggaccaagaggaccggctggccccatgggaccacctggagagcagggaccacgtggagac
agaggccctaagggtgagaagggaagtccaggccccagaggaagagatggcgagcccggc
acaccaggcaaccctggacctcccggaccaccaggcccaaacccacctggacttggagga
aactttgcggctcagatggctggaggttttgatgagaaagcaggtggagctaacttgggt
gtgatgcaaggcccaatgggccccatgggtccccgtggtcctcctggcccctctggagca
cctggcgtacaagggttcccaggcagcccgggagaagctggtgaacccggaccttctggc
cctatgggacctcgcggcccacctggaccacctggaaaatctggaagtgatggtgagaat
ggtaaacctggcaagcctggtgaccgtggacccactggaccgcagggagctcgtggattc
cctggaacccctggacttcctggcatcaaaggacacagaggacacccaggtcttgatggc
accaagggagagactggagctgctggagctaagggagagtcaggctcacctggtgagaat
ggcgcccctggaccaatgggccctcgtggtcttcctggtgagagaggacgccctggacct
tctggagccgctggtgcccgtggtaatgatggtcttcctgggcctgctggtcctcctggt
cctgttggtcctgctggtgccccaggtttcccaggagcccctggttccaagggtgaggcc
ggacccactggtgctcgtggagctgagggagcccaaggatcccggggagaggctggcact
ccaggttctcctggacctgctggagcctctggtaaccctggtactgatggtattcctgga
gccaaaggatctgctggtgcccctggtattgctggtgccccaggtttcccaggacctcgt
ggcccacctggacctcagggagctaccggacctcttggacccaagggtcaaagtggagac
cctggtatcccaggatttaagggagaatctggaccaaaaggagagaggggtgttgcaggg
cctcagggagccccaggcccaattggtgaggaaggtaaaagaggacctagaggagagccc
ggttctgctggccctcttggacctccaggagagagaggagctccaggtaaccgtggattc
cctggtcaagatggtctttctggtgctaagggtgctcctggtgatcgtggtgttcctgga
ctgtctggaccaaaaggtgctggtggagatccaggtcgtcctggcgagcctggtcttcct
ggagcaagaggtctcactggtcgtcctggagatgctggaccccaaggaaaagttggccca
agtggtgctcctggtgaggatggtcgtcctggtccccctgggcctcagggagctcgtgga
cagcctggtgtgatgggattcccaggacccaagggaggcaatggtgagcctggcaaacct
ggagagaaaggacttgttggcagctctggtcccagaggtttgcctggtaaagatggtgag
actggagccgctggccctcctggccctgctggacctgctggagagagaggtgaacaagga
cagcctggtcctcctggcttccagggtctacctggaccttctggacccccaggagagggc
ggcaaaccaggtgaccagggtgttcctggagagggtggtgcccctggtgtggttggacca
agaggtgagcgtggtttccctggtgagagaggaggtgctggaccccagggtcttcaggga
cctagaggacttcctggaacacctggaactgatggacccaagggtgcgataggcccggct
ggtgctgttggtgccctaggtccacctggtctgcagggtatgcctggtgaaagaggtatt
gctggtatcgctggtcctaagggtgacagaggtgactctggagagaaaggacctgaggga
gctcctggcaaagatggtacaagaggtttgactggccctattggtccacctggtccttct
ggtcccaatggagcgaagggtgaaactggtgctattggcccaactggagctgctggagct
cgtggtgctcctggtgaccgtggtgaggttggacctcctggccctgctggttttgctgga
ccccctggttctgatggccagcccggaattaaaggagagcagggagagtcaggccagaaa
ggagatgctggatctcctggacctcaaggaccctctggagcacccggtccagttggccca
actggtgtctctggacctaaaggagcccgtggagcacagggagccccaggtgttactggt
ttcccaggtgctgctggaagagttggaccacccggtcctaatggaaaccctggccctgct
ggtcctgttggtcctgctggtaaagatggtcctaaaggagtgcgtggtgatgctggtccc
ccaggaagaccaggagatgctggactgcgtggacctcctggactccctggagagaaggga
gaggctggagaggacggcccccctggtcctgatggtcctactggtccttcaggtttagct
ggtcagcgtggtattgttggtctgcctggtcagcgtggtgaaagaggtttccctggcctt
ccaggaccttctggtgagcctggcaaacagggtgctcatggtattgctggtgaacgtggc
ccccctggccctgtaggaccccctggaataagtggaccttctggagaacctgggcgtgag
ggtaatcccggatctgatggtcctcctggcagagatggtgcccctggtgtgaagggtgaa
cgtggtaacactggtcctattggtgctcctggtgctcctggtgcccctggttctcctggt
cctgttggacctgtaggcaaacagggagacagaggagagaatggaccacaaggaccttct
ggacctcctgggcctgctggagcaagaggcatggctgggccccaaggtcctcgtggagac
aagggagagtctggtgaggctggagaaagaggacagaagggacacagaggattcactggt
ctgcaaggtcttcctggacctcctggtgctcctggcgaccagggtgctgctggacctgcc
ggacctagtggagctaagggaccccctggacctgttggtccatctggaaaggatggtgca
aatggtatccctggacccattggaccccctggacctcgtggacgctctggagaatctggc
ccagctggtcctcctggtaacactggaccccctggtcctcctggtcctccaggccctggc
attgatatggctgcctttgctgggctgggtcagccagagaagggtcccgatcccatgcgt
tacatgcgtgctgacgaggcctccaacaatctgagacagcatgatgtggaggttgatgcc
accctgaaatccattaacagccagattgaggatatccgcagccctgatggatctcgcaag
aaccctgctcgctcctgccgcgacctgaaactctgccaccccgattggaagagcggtgac
tactgggtggatcctaaccttggctgcactgctgatgccatcaaggtcttctgcaacatg
gagactggagaaacatgtgtgaagccaactacaagcagcatcccacgcaagaactggtgg
agtgccaagagcaagggtcagaagcacgtatggttcggcgagaacatgggcggtggcttc
catttcagctatggtgagaagatcccgactccaaatgtggccagcattcagatgaacttc
ctaagactgctatctagcgaggcctctcagagtatcacctaccactgcaagaacagtgtg
gcctacatggatgaggccaccggcaacctgaagaaggctcttctgctgcagggctccaac
gatgtagaaatcagagcagagggtaacagccgattcacatacggtgtgctggaggatggc
tgcaagaaacacaccggccaatggggtaagactgtgattgagtacaaaactcagaagaca
tctagactgcccatcgtggacattgctcctttggacatcggtggagctaatcaggagttt
ggagtggacattggaccagtctgtttcttgtaa
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