Ictalurus furcatus (blue catfish): 128608190
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Entry
128608190 CDS
T09387
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ifu01009
]
128608190 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128608190 (hdac6)
04131 Membrane trafficking [BR:
ifu04131
]
128608190 (hdac6)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128608190 (hdac6)
Enzymes [BR:
ifu01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
128608190 (hdac6)
Protein phosphatases and associated proteins [BR:
ifu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
128608190 (hdac6)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
128608190 (hdac6)
Membrane trafficking [BR:
ifu04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
128608190 (hdac6)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
128608190 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
128608190
NCBI-ProteinID:
XP_053481706
LinkDB
All DBs
Position
5:30460705..30479620
Genome browser
AA seq
1103 aa
AA seq
DB search
MDSASDQTPKGLKRSPKKTPQSSGKQENSKRSNKPSLQEARNKGRRNRGKAEEEMTSKLK
IMDLHDKLKATGTGLVYSDVFARYRCLWDSSHPECPERVTAIVGMMETEGLLSRCVRVET
RAASDEELSLVHTKEYVDLMKSTQKMTEEELKCVSECYDSIYLHPDSFSCACLAAGSVLQ
LVDKVMTSELRNGFAVCRPPGHHAQAEQMNGYSMFNNVAVAAHYARKQHGVQRVLIVDWD
VHHGQGVQYAFQEDPSVLYFSVHRYEESLFWPHLPEGESGAVGSGPGEGYNINVPWNKTG
MEDGDYVSAFQRILLPVAYEFQPQLVLVAAGFDSVIGDTKGEMCASPQCFSVLTHMLMGL
AEGRIVLALEGGYNLQATAEAACASLRSLLGDPCPHLNSPGAPSESALKSISKTVSALYP
FWTSLQTLEGGPLSEAEPLPSAVCVEKLESSVKVTGLVYDERMMEHHNMWDSHHVELPQR
IFRIFSHHEDLGLVDRCQRIPARLATEDELALCHGSEHIATIKSTEQMKPRDLNRLGDEY
NSIYISKESYKCALLAAGACFSVAQSILTGQVRNGVAIVRPPGHHAERDTACGFCFFNTA
ALTARYAQSITHNALRVLILDWDVHHGNGTQHIFEDDDSVLYISLHRYDEGTFFPCSEDA
DYDKVGRGKGTGYNVNIPWSRAKMGDPEYLAAFHHVVMPIAREFAPELVLVSAGFDAARG
DPLGKYQVTPECYAHLTHQLLSLAAGRVLVILEGGYNLTSISTSMAMCTSMLLGDTPPLL
PPLPPPHPSASISINNVLRAHAPYWRSLRIQIPESLRLSLPSPKPKTKHTPAGKDKNSPP
QVTPQQQHQRTAVPISPASPTTDQEDSGLDELTQGLRCLDLSTSTISASSSPASVPVGGA
RPKVKPSPQRDSTEVQEVSPVPVIESGIVDGDVKAESAPSKQEEQSEPQAEESDAGAVCD
QESPALEGACGYTKKSVFELVCGAVDMAGDTMYVVDPLAWCPHLESVRAVPAGGIDVFRP
CEECGAETENWICLCCYKVLCGRFVNEHMVAHGQLSSHPLVLSFADLSVWCYSCESYVHN
KVLYEAKNAAHLAKFGEEIPPIN
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggattctgcatcagatcaaactccgaagggtttgaaacgctctccaaagaaaacacca
cagagctctggcaagcaggaaaacagcaaacgcagcaataaaccaagtctccaggaggct
agaaataaaggtagacggaaccgaggcaaagcagaagaggagatgaccagcaaactcaaa
atcatggatttgcacgacaagctgaaggcaaccggaactggcctggtttactccgacgtc
tttgcccgttatcgctgcctgtgggactccagtcaccccgagtgtccggagagagtgacc
gctatagtagggatgatggagacggaggggctgctgtctcgctgcgtgcgggtggagaca
agagctgcatcagacgaggaactgtctctggttcacacgaaggaatacgttgatctcatg
aagtccactcagaagatgacggaagaggagctgaagtgtgtctctgagtgctatgactcc
atctacctccatcctgactctttctcatgtgcctgtctagccgccggctctgtcctccag
ctggttgacaaggtgatgacatcggagcttcgcaatggcttcgccgtgtgcaggcctcca
ggacatcacgcccaggctgagcagatgaacggatactccatgtttaataacgtcgcggtg
gcagcgcattacgctcggaaacagcacggcgtccagcgggttctgattgtggactgggac
gtgcatcacggtcagggagtccagtacgccttccaggaggatcccagtgtcctgtatttc
tccgtacatcggtacgaggagagcttgttctggcctcacctgcccgagggagaaagcggc
gctgtgggttcaggaccaggcgagggctacaacatcaacgtgccctggaacaagacaggg
atggaggacggagattacgtctcagcgttccagagaattctgctgcctgtagcctacgag
tttcagcctcaacttgtgttagtagccgctggctttgactctgtgattggtgatacgaag
ggtgagatgtgtgcgagtccccagtgtttctctgtactgacccacatgctgatgggtctg
gccgagggccggatcgtgctcgcgttggagggaggatataacctgcaggccacagcagag
gcggcttgtgctagtttgaggtcactcttgggtgacccctgccctcatctgaactcgcca
ggagctccgagtgagagtgctctaaagtccatctctaagacagtttctgctctgtatccg
ttttggaccagcctgcagactctggagggaggccctctatccgaggcagagcccttaccc
tcagccgtatgtgtggagaaattggaatcttccgtgaaagttaccggactcgtttatgac
gagcgtatgatggagcatcacaacatgtgggacagccatcacgttgagctccctcagaga
atcttccggatcttctcccaccatgaggatttgggactcgtggaccgttgccagcggata
ccggctcgtttagccacagaggacgagctcgcactttgtcacggatcagagcacatcgct
acgataaagagcaccgagcagatgaagcccagagacctgaacaggctcggagacgaatat
aactccatctacatcagtaaagagagctataagtgtgcactgctggcagctggagcatgt
ttcagtgtagctcagtccatcctcactggtcaggtgaggaacggtgtggctatcgtacgc
ccccctgggcatcacgcagagagagacaccgcctgcggattctgcttcttcaacacggct
gccctgaccgcccgctatgctcagagcattacccacaacgccctgcgcgtcctcatcctc
gactgggacgtgcaccatggcaacggcacacaacacatctttgaggatgatgacagtgtg
ctctacatctctctccatcgctatgatgaaggcacattcttcccctgctcagaagacgcc
gattacgataaagtgggccgagggaaaggcacgggatacaacgtcaacattccctggagc
agagccaagatgggcgacccggaatatctagcagccttccaccatgtggtgatgccgata
gcacgagagtttgctccggagctggtgctggtgtcggccgggtttgacgccgctcggggt
gatccgttagggaagtaccaggtgaccccggagtgctacgcccacctcacacaccagctg
ctgagtctagcagcaggacgagtgcttgtcattttagagggaggttataacctcacgtcc
atctccacatccatggccatgtgcaccagcatgctcctgggtgacacgcccccgctgctg
cctcccctgccccctccacaccccagcgcttccattagcatcaacaacgtcctgcgagca
cacgccccctactggagatctctcagaatacagattccagagtctctgcgtttgtccttg
ccttctcctaaacccaagaccaagcacacaccagcaggaaaagacaaaaattctcctcct
caggtcacccctcagcagcagcaccaacgcaccgctgtgccaatttcaccagcatctcca
actactgatcaggaggactcggggctagacgagctcactcaaggcctgcgctgtctggac
ctcagcacatctaccatatctgccagttccagccccgcctctgtcccagtgggcggggct
agacctaaagtgaagcccagcccacagagggactccacagaagtgcaggaggtgtcgcct
gtccccgtgatagaaagcggtatagtagacggtgatgtaaaagccgagtccgcgcccagc
aaacaggaggaacagtcagaaccacaggcggaagaatcggacgccggggcagtgtgtgat
caggagagtcctgcgctggagggagcgtgtggttacacgaagaaatccgtcttcgagctc
gtgtgtggcgccgtggacatggccggggatacgatgtacgtagtggaccctttggcgtgg
tgcccacacttggagtcagtgcgtgcggtgccagcagggggcatcgacgtgttccggccg
tgcgaggagtgcggcgccgagacggagaactggatctgcctctgctgctataaggtgttg
tgtgggcgttttgtgaacgagcacatggtggcccacggtcagctgtcctctcaccctctg
gtcctgagctttgctgatctatcagtgtggtgctactcctgcgagtcctacgtgcacaac
aaggtgctgtatgaagcaaagaatgctgctcatcttgctaagtttggggaggagattccc
cccatcaactaa
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