Ictalurus furcatus (blue catfish): 128608484
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Entry
128608484 CDS
T09387
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
128608484 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128608484 (bard1)
04121 Ubiquitin system [BR:
ifu04121
]
128608484 (bard1)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128608484 (bard1)
03400 DNA repair and recombination proteins [BR:
ifu03400
]
128608484 (bard1)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
128608484 (bard1)
Ubiquitin system [BR:
ifu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
128608484 (bard1)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
128608484 (bard1)
DNA repair and recombination proteins [BR:
ifu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
128608484 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
zf-RING_6
Ank_2
Ank_4
Ank_3
Ank_5
BRCT
BRCT_2
zf-RING_5
zf-RING_10
ANK_LRRK2
zf-C3HC4
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
128608484
NCBI-ProteinID:
XP_053482192
LinkDB
All DBs
Position
6:2186762..2210512
Genome browser
AA seq
728 aa
AA seq
DB search
MASDPGAESDKGMWVKTREAMAHFRKLLLCSKCSNILSEPVCLGACEHLLCRSCAGPRVG
DGCSVCLSPSWVKDVHINRQISNITQLFLQLEAVLHPSECSAPPADSSAPSPGPSVLTKK
KNFKIWFSPKSRKVRCRAENPADSDPSAPQRSDSGVLSVFNFTSSSSQDSGSSTPPRVRR
GAEKKTTTGRKKRKSVVRKQVRGTRIPSKEKKMRLEAVNQQWGLGKDDPVQEEVKQNEAR
RGKRVSFQCPSAEEDQEEVLQGEKRVLGRSILKDGTEKTPDQALSELQPPRSSPKRSEPQ
GGSPQSTPKRPRRDRSPGQRVRRRTRSGPSSETSSIFEKSVEERKGKESPGSCPATGRSQ
TSPAYTKRNHKGETPLHLAAIKGDVEMTKALLEQGADPNLKDHAGWTPLHEACNLGHVGV
VEVLLQQGALINTPGYENDSPLHDTVRNGHASVAKLLLQHGASTTVLNIFGLRPVDYATT
PEMREVLSLVPEGPHSVTTPVSSPGNLSKSPALMKKDVRATLIGSKLTADQQNQLAEAAR
VLRGRRVKTFSSAVTHVVVPDGPMPSTLTVLQGILNGCWVLTFRWLAECLQQGRRIEESE
FEVAEGPQRARANRVSLLPPLFNGCFFYLLGSFHKPPRDELVQLVKAGGGRLLSRQPKAD
SDVTQTVTAAAYHARPDSDQALCTHYILYEPQSSSRPGPVRLGKVWSAPSSWLLDCIRAF
SLLPVPEL
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgatcctggagcagagtcagataaggggatgtgggttaaaactcgagaggcc
atggcacatttccggaagctacttttgtgctctaaatgctcgaacatcctgagtgagccg
gtgtgtctgggagcctgtgagcatctactgtgcaggtcgtgtgcgggtcctcgggtggga
gacggctgcagtgtgtgtctcagtccctcctgggtgaaagacgtccacatcaacaggcag
atcagtaacatcacgcagctcttcctgcagctagaggctgtactccatccttccgagtgc
tcggcgccccccgctgattcttcagcaccctcgccgggaccctccgtcctcaccaagaag
aagaactttaagatctggttcagtccgaagagccgtaaagtgcgctgtcgagcggagaac
ccagcagactcggatccgtcggcgccgcaacgctccgactccggcgtcctgtccgtcttc
aacttcacctcctcctcctcccaggattcgggctcctccacacctcccagagtgagacga
ggcgctgagaagaagacgacgacgggacgaaagaaacgaaagagcgtcgttaggaagcag
gttcgaggcaccaggattccgagtaaggaaaagaagatgaggctggaggccgtgaaccag
cagtgggggttggggaaagatgatccggtgcaggaggaggtgaagcagaacgaggcgagg
cgcggtaagagggtatccttccagtgtccaagcgctgaagaagaccaggaggaggttctt
cagggggagaaacgagtgctcgggaggagcatcctgaaggacgggacggagaagacacct
gatcaagcgctctctgagctccagcctcctcgttcttctccgaaaagatccgaaccacaa
ggtggaagcccgcagagcacgccgaagcgtcccagacgagacagatctccgggccagagg
gtgaggaggaggacgagatcaggtccgtcttcagagacttccagcatttttgaaaaatcc
gtagaggaaaggaaagggaaggaaagcccagggagctgtcctgccactgggaggagccag
actagccccgcctacacgaagaggaaccataaaggagagacgcctctgcaccttgccgcc
attaagggtgacgtggagatgacgaaagcgctcctggagcagggagccgaccccaacctg
aaggaccacgccggctggaccccgctgcacgaggcgtgtaacctgggtcacgtgggtgtg
gtggaggtgctgctccagcagggggcgctgattaacacacccggatacgagaacgactct
cctctacacgacaccgtgaggaacggccatgcctctgtcgccaaactactgcttcagcac
ggcgcctcgaccactgttctgaatatatttggtcttcgacctgttgattacgccacgact
ccagaaatgcgagaggtcctaagtttggtccctgagggacctcattccgtaaccacgcca
gtgagctctccaggaaatctgtcaaagtctccagctctgatgaagaaggacgtcagggcc
actctgatcggtagtaaactgacagcggatcagcagaaccagctcgccgaagctgctcga
gtcctgcgaggaagacgagtcaagactttctccagcgcagtcacacatgtggtagtgccg
gatggtcccatgccctccaccctcaccgtcctgcagggaatcctcaacggctgctgggtc
ctaaccttcagatggctggcggagtgtctgcagcagggccgtcggatagaggagagcgag
ttcgaggtggccgagggtcctcagagggctcgagcgaaccgagtcagcctgttgcctcct
ctcttcaacggctgcttcttctacctgctcggctctttccacaagcctcccagagacgag
ctggtgcagctggtgaaggcgggaggaggccggctgctcagccggcagcccaaagccgac
agcgacgtgactcagacggtaacggcggcggcgtatcacgctcggcccgactcggatcag
gcgctctgcactcactacatcctgtacgagccgcagagctcgagcagacccgggccggtc
cgtctgggcaaagtgtggtcagctccttcatcatggctcctggactgcatcagggccttc
agcctccttcctgtgcccgagctctga
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