Ictalurus furcatus (blue catfish): 128608662
Help
Entry
128608662 CDS
T09387
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04382
Cornified envelope formation
ifu04510
Focal adhesion
ifu04512
ECM-receptor interaction
ifu04518
Integrin signaling
ifu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128608662 (col4a2)
04518 Integrin signaling
128608662 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128608662 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128608662 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
128608662 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ifu04147
]
128608662 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
ifu00536
]
128608662 (col4a2)
Exosome [BR:
ifu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128608662 (col4a2)
Glycosaminoglycan binding proteins [BR:
ifu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128608662 (col4a2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128608662
NCBI-ProteinID:
XP_053482541
LinkDB
All DBs
Position
6:complement(13211010..13287534)
Genome browser
AA seq
1670 aa
AA seq
DB search
MKCKLRMEGVMQPQHRGVVKILRVLLICLIVLVLTTEVNAGGKKHSEICGGRDCSGGCQC
YPEKGARGQPGILGTQGPTGPPGRAGDPGLQGFKGEKGNSGETGITGLKGAQGMIGSPGF
PGADGIPGHPGQQGPRGKPGADGCNGTRGDPGIPGLEGFNGVAGEKGQPGRKGEKGDSLE
ISVYMERFRGEKGLPGYPGPTGPPGIKGAQGRPGIIGAQGEKGYRGPPGPKGVANTLIKG
DKGNPGDVGDPGPPGNQEFKDTFPGPKGDKGSKGEPGDLAFHIKGETGLPGLPGNRGYPG
STGAPGRKGEAGDSGIPGQPGSKGEPGEAGELIFSNGYSEVGPPGERGPPGPDGLRGNKG
SQGPPGPDAQSQEFVLPGPFGLKGEKGRKGDAGEPGIPASEPGPPGFDGLPGPPGPAGPK
GSWSVSFRGPEGPHGRPGNAGVKGQKGDHGHCECILQTSPPGPPGPAGDQGDPGTVGEWG
QLGDQGDQGPRGLLGLHGFPGPHGMPGPKGSKGDRREVKDKGSPGEPGDPGRPGVQGPQG
RHGTSGIDGAPGLHGLPGEGPVGEPGEKGYPGRPGIPGFPGLAGEPGQVNGAPKGVKGIA
GDAGLNGYDGVPGTPGTSGDCSLQGEGGKWITAGDCAVLTGPPGEIGPPGHPGLEGMPGF
PGPKGFAGTRGKIGNKGEQGDQGIGGSPGKTGFTGPRGDLGSTGLKGPRGSSGIPGRPGL
DGESGQKGPNGEALGASPGPTGEPGLPGLQGIKGPPGNPGASGYPGMGGMPGMIGIKGES
GPSGLQGEIGRPGPAGIFGFPGKPGPEGLPGPPGHTGLPGPSGETGHRGDSGPPGLIGVK
GVRGEPGNDAGPGDYGPRGDPGDPGHVGPTGVPGLKGIKGSPGMAGFPGMSGDPGLKGLQ
GETGLVGIPGLQGDKGGMGHQGEKGERGVMGPPGKMSIGEMTHMKEVMKGAKGDHGFEGV
PGFTGPRGTKGLPGIPGQEGLHGLPGDPSTVKGLHGQIGALGLPGQKGMPGPTGPPGIQG
FFGPTGQRGDKGSSGAYGATGDVGIKGIKGEQGDIVDLPGPTGSRGETGLLGPLGQKGYT
GEPGVRGSPGFDGIKGIKGTQGEPGKQGPSGAEGLKGFPGNQGSKGWPGVPGQAGVPGKP
GHPGHIGFPGLRGISGLDGLKGLQGLQGVAGLDNWGIPGEDGAKGEKGATGIPNTETGVP
GDDGLKGSTGDPGDQGEPGPLGNQGPPGAQGIPGRKGLSGDIGLPGQKGLPGFPGATGLP
GFPSPPGSKGEYGFVGDFGTPGPKGPPGDIGDKGFPGPSGISGGKGIKGAMGKMGVPGPR
GLQGDRGVSGSKGETGPPGPSGPPGAEGLRPVPVKVPGERGPPGKVGKQGIQGVRGEYGP
MGPPGDAGYLGPQGQKGMPGLPGIPGTPGIRGDVGPIGHQGLQGLEGNSGHPGIPGAPGM
PGRSVSVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRF
NTMPFLYCNPGDICYYASRNDKSYWLSTTAPIPMMPVEESEIKPYISRCSVCEAPSVAVA
VHSQDITIPQCPVGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGA
KGTCHYFSNKHSFWLTSIDQSFHSTPESETLKAGQLLSRISRCQVCMKNL
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgtaaattgcggatggagggagtgatgcagccacagcaccggggagtagtgaaa
atcctgagggttcttttgatttgtctcatcgttctcgtcctgacgacagaagttaacgca
ggtggcaagaagcacagtgagatatgtgggggcagagactgcagtggtggttgtcagtgc
tatcctgagaaaggtgcaaggggccagccaggtattcttggcactcagggccctacaggg
cctccaggacgtgcaggtgaccctggcctgcaaggttttaagggagagaagggtaattcg
ggtgagacaggcatcacaggactgaaaggggctcagggaatgataggaagtccagggttt
ccaggagcagatggtattccaggtcacccagggcagcaaggccctcgaggaaaacctggt
gctgatggctgtaatggaacccggggagatcctggaatacccggcctggagggatttaat
ggtgttgctggagaaaaaggtcagccaggcaggaagggtgagaaaggggactccctggag
attagcgtttacatggagagatttcggggcgagaaaggacttccaggatatccaggacct
acaggtcctcctggaatcaaaggtgctcaaggaagaccaggtatcatcggtgctcagggt
gaaaagggttatagaggacctccaggaccaaagggcgttgcaaatacactcattaaagga
gataaaggaaatccgggggacgttggagatccagggccaccagggaaccaagagtttaaa
gacaccttcccaggccccaaaggcgataaaggttctaaaggtgaaccaggagatttggcg
tttcatatcaaaggagagacaggacttcctggattacctgggaatcggggctatccagga
agcactggagcgccaggaagaaagggtgaagctggggattcgggtattcctgggcagccg
ggaagcaagggggaaccaggagaagcaggagagctgatattttcaaatggatacagtgaa
gttggtcctccaggagaacgtggcccaccagggcctgatggtctcagaggaaataaagga
tcacagggtccccctgggccagatgctcagtcacaggaatttgtgttgcccggaccattt
ggactaaaaggggaaaaagggaggaaaggtgatgctggggaacctggtatcccagcctca
gaacctgggcctccaggctttgatggcctaccaggaccacctgggccagccggaccaaag
ggatcatggagcgtgagtttcagagggcctgaagggccacatggacgtccaggaaatgct
ggagtgaaaggacaaaaaggtgaccatggtcattgtgagtgcattttgcaaacctcccct
cctggaccccctggcccagctggagatcagggtgaccctggaacagtgggagagtggggt
cagctgggtgatcagggagaccagggacccagaggcctccttggtctgcatggctttcct
gggccacatgggatgcctggccctaaaggctctaagggagatagaagagaggttaaagac
aaaggatcaccaggagaacctggagacccagggagaccaggtgtacaaggaccacagggc
agacatgggactagtggaatagatggtgcccctggacttcatggtcttcctggagaaggg
ccagttggtgagcctggagagaagggttacccaggcaggccaggtataccagggttccca
ggactagcaggggaaccaggtcaagtaaacggagcacctaaaggtgttaagggtatagca
ggtgatgcaggattaaatggttatgatggagtcccaggcacaccgggtacttcaggagac
tgtagtctacaaggagaaggaggcaagtggattacagcaggcgattgcgcagttttaact
ggacccccaggagagataggacccccaggacatcctggattggaggggatgccaggattt
cctggtccaaaaggctttgcaggaactagaggcaagataggaaataaaggagaacaagga
gaccagggcatcggaggctcacctggaaaaacaggttttactggacctcgtggagactta
ggcagtactggactaaaaggtcccagaggttcttctggcatcccgggtagaccagggctt
gatggtgagtctggacaaaagggtcctaacggtgaagctctaggagcatctcctggaccc
actggtgaaccaggactgccaggactgcaggggataaaaggcccccctggaaaccctggc
gcaagtggatacccaggcatggggggaatgcctgggatgattgggatcaaaggtgaatca
ggtccctcaggattacagggggaaataggaagacctggaccagcaggaatatttggcttc
cctgggaagcctggtccggaaggactccctggacctccaggccacactggactaccaggg
cctagtggagaaacaggccatcgtggagatagtggtcccccagggctcataggagtgaag
ggtgttaggggagaaccaggaaatgatgctgggccaggagattacggaccacgaggggat
ccaggagaccctggacatgttggacctactggtgttcctggacttaaaggtataaaaggc
tctccgggcatggcaggtttcccaggaatgtcaggagatcctggtctaaagggccttcaa
ggagagacagggctggttggaataccaggcctacagggagataaaggaggcatgggccat
cagggagaaaaaggtgaaagaggagttatgggccctccaggtaaaatgtccattggagaa
atgacacatatgaaagaggttatgaagggtgctaaaggtgaccatgggtttgaaggagtt
ccaggtttcactgggccacgaggcaccaaaggtttgccagggattccaggacaagaaggg
cttcatggattacccggcgaccctagcactgtaaaaggtctgcatggacagattggagct
cttggactgcctggccagaaaggaatgccaggccctacaggacccccaggaattcaggga
ttttttggaccgactggacaaaggggggacaaaggttcatctggtgcttatggagcaaca
ggagatgttggaatcaaggggattaaaggtgagcagggtgacattgttgatctcccagga
cccacaggatccagaggggaaacagggctgcttggacctttaggtcagaagggttacaca
ggtgagcctggagttagaggaagtcctggttttgatggcatcaaaggaattaaagggact
caaggtgaacctggaaaacaagggccatcaggtgctgaaggcctaaagggctttccagga
aaccagggctctaagggctggccaggagtgccaggacaggcaggggtccccggtaaacca
ggtcatccaggacacataggttttcctggccttcgtgggatttcagggttggatggcctt
aaaggtctacaaggccttcaaggtgttgcaggtcttgacaattgggggataccaggtgag
gatggagcaaaaggagaaaaaggagctacaggtattcctaacacagagactggggtccct
ggagacgatggccttaaaggttctacaggagatccaggtgatcagggtgaaccaggccct
ctgggaaatcaagggcctccaggagcacagggaattcctggcagaaaaggtctatcaggg
gacatagggcttcctggtcagaaaggtcttccaggctttcctggagccaccggtcttcca
ggttttccatctccacctggatctaaaggagagtatggctttgtcggggattttggaacc
ccaggaccaaaaggaccaccgggggacataggagacaaaggatttcctggaccgtctggt
atttctggaggaaaaggtataaagggagccatgggaaagatgggagtcccaggaccacgt
ggtttacaaggtgaccgaggcgtttctggatctaaaggagagactggaccaccaggcccg
tctggcccccctggtgctgaaggactccgtccagttcctgtgaaggtgccaggggagaga
ggaccccctggtaaagttggtaagcaaggaatacaaggagtcagaggggagtatggccca
atgggaccccctggagatgcaggatatttgggaccacaggggcaaaaaggaatgccaggg
ctgcctggaataccaggaacaccaggtatccgtggggatgtgggaccaataggacaccag
ggcctccagggcctagaaggaaactctggccatcctggtattcctggtgcccctggtatg
cctggacgcagtgtcagtgttgggtacctcctggtgaaacacagccagtctgatcagacg
ccaatgtgccctgtgggaatgtccaagctgtgggatggctacagcttgctttactttgaa
gggcaggagaaagctcataatcaggaccttggtctggcaggctcttgtcttcctcgtttc
aacaccatgccattcctgtattgcaaccctggggacatatgctactatgctagtcgcaac
gacaagtcctattggctttctacaactgcccccattcccatgatgcctgtggaagagtca
gaaataaagccctatatcagccgctgttcagtatgtgaggctccatctgtggctgtagct
gtgcatagtcaggatataactatcccacaatgccctgtaggctggagaagcttatggatt
ggctactcattcctcatgcatacggcagccggagatgaaggaggtggtcagtctctggtg
tctccaggctcgtgtctggaggatttccgcaccactcccttcatcgagtgtaatggagct
aagggtacctgtcactacttctctaacaagcacagtttctggctgacatccattgaccag
tccttccacagtactcccgagtccgagacgctcaaggccggacagctcctctcacgcatc
agtcgctgccaagtctgcatgaagaacctgtga
DBGET
integrated database retrieval system
