Ictalurus furcatus (blue catfish): 128608662
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Entry
128608662 CDS
T09387
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04510
Focal adhesion
ifu04512
ECM-receptor interaction
ifu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128608662 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128608662 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128608662 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ifu04147
]
128608662 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
ifu00536
]
128608662 (col4a2)
Exosome [BR:
ifu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
128608662 (col4a2)
Glycosaminoglycan binding proteins [BR:
ifu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128608662 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
128608662
NCBI-ProteinID:
XP_053482541
LinkDB
All DBs
Position
6:complement(13211010..13287534)
Genome browser
AA seq
1670 aa
AA seq
DB search
MKCKLRMEGVMQPQHRGVVKILRVLLICLIVLVLTTEVNAGGKKHSEICGGRDCSGGCQC
YPEKGARGQPGILGTQGPTGPPGRAGDPGLQGFKGEKGNSGETGITGLKGAQGMIGSPGF
PGADGIPGHPGQQGPRGKPGADGCNGTRGDPGIPGLEGFNGVAGEKGQPGRKGEKGDSLE
ISVYMERFRGEKGLPGYPGPTGPPGIKGAQGRPGIIGAQGEKGYRGPPGPKGVANTLIKG
DKGNPGDVGDPGPPGNQEFKDTFPGPKGDKGSKGEPGDLAFHIKGETGLPGLPGNRGYPG
STGAPGRKGEAGDSGIPGQPGSKGEPGEAGELIFSNGYSEVGPPGERGPPGPDGLRGNKG
SQGPPGPDAQSQEFVLPGPFGLKGEKGRKGDAGEPGIPASEPGPPGFDGLPGPPGPAGPK
GSWSVSFRGPEGPHGRPGNAGVKGQKGDHGHCECILQTSPPGPPGPAGDQGDPGTVGEWG
QLGDQGDQGPRGLLGLHGFPGPHGMPGPKGSKGDRREVKDKGSPGEPGDPGRPGVQGPQG
RHGTSGIDGAPGLHGLPGEGPVGEPGEKGYPGRPGIPGFPGLAGEPGQVNGAPKGVKGIA
GDAGLNGYDGVPGTPGTSGDCSLQGEGGKWITAGDCAVLTGPPGEIGPPGHPGLEGMPGF
PGPKGFAGTRGKIGNKGEQGDQGIGGSPGKTGFTGPRGDLGSTGLKGPRGSSGIPGRPGL
DGESGQKGPNGEALGASPGPTGEPGLPGLQGIKGPPGNPGASGYPGMGGMPGMIGIKGES
GPSGLQGEIGRPGPAGIFGFPGKPGPEGLPGPPGHTGLPGPSGETGHRGDSGPPGLIGVK
GVRGEPGNDAGPGDYGPRGDPGDPGHVGPTGVPGLKGIKGSPGMAGFPGMSGDPGLKGLQ
GETGLVGIPGLQGDKGGMGHQGEKGERGVMGPPGKMSIGEMTHMKEVMKGAKGDHGFEGV
PGFTGPRGTKGLPGIPGQEGLHGLPGDPSTVKGLHGQIGALGLPGQKGMPGPTGPPGIQG
FFGPTGQRGDKGSSGAYGATGDVGIKGIKGEQGDIVDLPGPTGSRGETGLLGPLGQKGYT
GEPGVRGSPGFDGIKGIKGTQGEPGKQGPSGAEGLKGFPGNQGSKGWPGVPGQAGVPGKP
GHPGHIGFPGLRGISGLDGLKGLQGLQGVAGLDNWGIPGEDGAKGEKGATGIPNTETGVP
GDDGLKGSTGDPGDQGEPGPLGNQGPPGAQGIPGRKGLSGDIGLPGQKGLPGFPGATGLP
GFPSPPGSKGEYGFVGDFGTPGPKGPPGDIGDKGFPGPSGISGGKGIKGAMGKMGVPGPR
GLQGDRGVSGSKGETGPPGPSGPPGAEGLRPVPVKVPGERGPPGKVGKQGIQGVRGEYGP
MGPPGDAGYLGPQGQKGMPGLPGIPGTPGIRGDVGPIGHQGLQGLEGNSGHPGIPGAPGM
PGRSVSVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRF
NTMPFLYCNPGDICYYASRNDKSYWLSTTAPIPMMPVEESEIKPYISRCSVCEAPSVAVA
VHSQDITIPQCPVGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGA
KGTCHYFSNKHSFWLTSIDQSFHSTPESETLKAGQLLSRISRCQVCMKNL
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgtaaattgcggatggagggagtgatgcagccacagcaccggggagtagtgaaa
atcctgagggttcttttgatttgtctcatcgttctcgtcctgacgacagaagttaacgca
ggtggcaagaagcacagtgagatatgtgggggcagagactgcagtggtggttgtcagtgc
tatcctgagaaaggtgcaaggggccagccaggtattcttggcactcagggccctacaggg
cctccaggacgtgcaggtgaccctggcctgcaaggttttaagggagagaagggtaattcg
ggtgagacaggcatcacaggactgaaaggggctcagggaatgataggaagtccagggttt
ccaggagcagatggtattccaggtcacccagggcagcaaggccctcgaggaaaacctggt
gctgatggctgtaatggaacccggggagatcctggaatacccggcctggagggatttaat
ggtgttgctggagaaaaaggtcagccaggcaggaagggtgagaaaggggactccctggag
attagcgtttacatggagagatttcggggcgagaaaggacttccaggatatccaggacct
acaggtcctcctggaatcaaaggtgctcaaggaagaccaggtatcatcggtgctcagggt
gaaaagggttatagaggacctccaggaccaaagggcgttgcaaatacactcattaaagga
gataaaggaaatccgggggacgttggagatccagggccaccagggaaccaagagtttaaa
gacaccttcccaggccccaaaggcgataaaggttctaaaggtgaaccaggagatttggcg
tttcatatcaaaggagagacaggacttcctggattacctgggaatcggggctatccagga
agcactggagcgccaggaagaaagggtgaagctggggattcgggtattcctgggcagccg
ggaagcaagggggaaccaggagaagcaggagagctgatattttcaaatggatacagtgaa
gttggtcctccaggagaacgtggcccaccagggcctgatggtctcagaggaaataaagga
tcacagggtccccctgggccagatgctcagtcacaggaatttgtgttgcccggaccattt
ggactaaaaggggaaaaagggaggaaaggtgatgctggggaacctggtatcccagcctca
gaacctgggcctccaggctttgatggcctaccaggaccacctgggccagccggaccaaag
ggatcatggagcgtgagtttcagagggcctgaagggccacatggacgtccaggaaatgct
ggagtgaaaggacaaaaaggtgaccatggtcattgtgagtgcattttgcaaacctcccct
cctggaccccctggcccagctggagatcagggtgaccctggaacagtgggagagtggggt
cagctgggtgatcagggagaccagggacccagaggcctccttggtctgcatggctttcct
gggccacatgggatgcctggccctaaaggctctaagggagatagaagagaggttaaagac
aaaggatcaccaggagaacctggagacccagggagaccaggtgtacaaggaccacagggc
agacatgggactagtggaatagatggtgcccctggacttcatggtcttcctggagaaggg
ccagttggtgagcctggagagaagggttacccaggcaggccaggtataccagggttccca
ggactagcaggggaaccaggtcaagtaaacggagcacctaaaggtgttaagggtatagca
ggtgatgcaggattaaatggttatgatggagtcccaggcacaccgggtacttcaggagac
tgtagtctacaaggagaaggaggcaagtggattacagcaggcgattgcgcagttttaact
ggacccccaggagagataggacccccaggacatcctggattggaggggatgccaggattt
cctggtccaaaaggctttgcaggaactagaggcaagataggaaataaaggagaacaagga
gaccagggcatcggaggctcacctggaaaaacaggttttactggacctcgtggagactta
ggcagtactggactaaaaggtcccagaggttcttctggcatcccgggtagaccagggctt
gatggtgagtctggacaaaagggtcctaacggtgaagctctaggagcatctcctggaccc
actggtgaaccaggactgccaggactgcaggggataaaaggcccccctggaaaccctggc
gcaagtggatacccaggcatggggggaatgcctgggatgattgggatcaaaggtgaatca
ggtccctcaggattacagggggaaataggaagacctggaccagcaggaatatttggcttc
cctgggaagcctggtccggaaggactccctggacctccaggccacactggactaccaggg
cctagtggagaaacaggccatcgtggagatagtggtcccccagggctcataggagtgaag
ggtgttaggggagaaccaggaaatgatgctgggccaggagattacggaccacgaggggat
ccaggagaccctggacatgttggacctactggtgttcctggacttaaaggtataaaaggc
tctccgggcatggcaggtttcccaggaatgtcaggagatcctggtctaaagggccttcaa
ggagagacagggctggttggaataccaggcctacagggagataaaggaggcatgggccat
cagggagaaaaaggtgaaagaggagttatgggccctccaggtaaaatgtccattggagaa
atgacacatatgaaagaggttatgaagggtgctaaaggtgaccatgggtttgaaggagtt
ccaggtttcactgggccacgaggcaccaaaggtttgccagggattccaggacaagaaggg
cttcatggattacccggcgaccctagcactgtaaaaggtctgcatggacagattggagct
cttggactgcctggccagaaaggaatgccaggccctacaggacccccaggaattcaggga
ttttttggaccgactggacaaaggggggacaaaggttcatctggtgcttatggagcaaca
ggagatgttggaatcaaggggattaaaggtgagcagggtgacattgttgatctcccagga
cccacaggatccagaggggaaacagggctgcttggacctttaggtcagaagggttacaca
ggtgagcctggagttagaggaagtcctggttttgatggcatcaaaggaattaaagggact
caaggtgaacctggaaaacaagggccatcaggtgctgaaggcctaaagggctttccagga
aaccagggctctaagggctggccaggagtgccaggacaggcaggggtccccggtaaacca
ggtcatccaggacacataggttttcctggccttcgtgggatttcagggttggatggcctt
aaaggtctacaaggccttcaaggtgttgcaggtcttgacaattgggggataccaggtgag
gatggagcaaaaggagaaaaaggagctacaggtattcctaacacagagactggggtccct
ggagacgatggccttaaaggttctacaggagatccaggtgatcagggtgaaccaggccct
ctgggaaatcaagggcctccaggagcacagggaattcctggcagaaaaggtctatcaggg
gacatagggcttcctggtcagaaaggtcttccaggctttcctggagccaccggtcttcca
ggttttccatctccacctggatctaaaggagagtatggctttgtcggggattttggaacc
ccaggaccaaaaggaccaccgggggacataggagacaaaggatttcctggaccgtctggt
atttctggaggaaaaggtataaagggagccatgggaaagatgggagtcccaggaccacgt
ggtttacaaggtgaccgaggcgtttctggatctaaaggagagactggaccaccaggcccg
tctggcccccctggtgctgaaggactccgtccagttcctgtgaaggtgccaggggagaga
ggaccccctggtaaagttggtaagcaaggaatacaaggagtcagaggggagtatggccca
atgggaccccctggagatgcaggatatttgggaccacaggggcaaaaaggaatgccaggg
ctgcctggaataccaggaacaccaggtatccgtggggatgtgggaccaataggacaccag
ggcctccagggcctagaaggaaactctggccatcctggtattcctggtgcccctggtatg
cctggacgcagtgtcagtgttgggtacctcctggtgaaacacagccagtctgatcagacg
ccaatgtgccctgtgggaatgtccaagctgtgggatggctacagcttgctttactttgaa
gggcaggagaaagctcataatcaggaccttggtctggcaggctcttgtcttcctcgtttc
aacaccatgccattcctgtattgcaaccctggggacatatgctactatgctagtcgcaac
gacaagtcctattggctttctacaactgcccccattcccatgatgcctgtggaagagtca
gaaataaagccctatatcagccgctgttcagtatgtgaggctccatctgtggctgtagct
gtgcatagtcaggatataactatcccacaatgccctgtaggctggagaagcttatggatt
ggctactcattcctcatgcatacggcagccggagatgaaggaggtggtcagtctctggtg
tctccaggctcgtgtctggaggatttccgcaccactcccttcatcgagtgtaatggagct
aagggtacctgtcactacttctctaacaagcacagtttctggctgacatccattgaccag
tccttccacagtactcccgagtccgagacgctcaaggccggacagctcctctcacgcatc
agtcgctgccaagtctgcatgaagaacctgtga
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integrated database retrieval system
