Ictalurus furcatus (blue catfish): 128608857
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Entry
128608857 CDS
T09387
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128608857 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128608857 (prpf40a)
Spliceosome [BR:
ifu03041
]
Complex A
U1 snRNP components
U1 related factors
128608857 (prpf40a)
Complex B
128608857 (prpf40a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DTW
Motif
Other DBs
NCBI-GeneID:
128608857
NCBI-ProteinID:
XP_053482963
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All DBs
Position
6:19657502..19677472
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AA seq
878 aa
AA seq
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MSSTDGNNAPSQAPPFPGVPPSAIPPPFMGPPGIPPHFPPMGIPPMGQRPPNMAPMPGGM
IPPPMMPPMGAPPMGQMPGMMPPMMPPMMPPRMPAATMQPTGPPGVSPVDTAANAAPGTT
STSANSPPDDQPKKQKSVWTEHKSVDGKTYYYNTETKQSTWEKPDDLKSPAEQMLSKCPW
KEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTVDVVAPGTTPILTAHTDA
VLAVPAVPEADTTIATSVAEEQPSQLPVQGGEGGSEATVTSPKDTPTTETQASNDTSKEE
RPELVKKVYKWNTKEEAKQAFKELLKEKGVASNASWEQAMKMIINDPRYSALPKLSEKKQ
AFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHDKMTSTTRYKKAEQMFSDLEVWSCV
PERDRLEIYDDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLD
NPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQKFLD
ELHDHGQLHSMSAWMEMYPTISSDIRFASMLGQPGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKGFLVEISTSFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEAAFKSMLKQATPSLEPDATWEGVRERFLKEPAFEDITLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEEDEYHSKKKKRSTSKSPSEHSSSG
ESERSYKKSKKHKKKGKKRRHKSASPESDGEKDRKGRDKDKDKENDKSRGKNRSESKQKS
PKRKTPKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctactgatgggaataatgctccaagccaagcaccaccttttcctggagttcct
ccatcagcaataccacctccttttatgggaccgcctggaataccacctcacttcccgcct
atgggaatcccaccgatgggtcagaggccccccaacatggctcccatgcctggaggaatg
attccaccccccatgatgcccccgatgggtgctcctccaatgggacagatgccaggcatg
atgccaccgatgatgccgccaatgatgccaccacgcatgccagcagcgacgatgcagcca
acaggaccgcctggtgttagtcctgtggatacagctgctaatgctgcccctggaactact
agcacatcagcaaactctcccccagatgaccagcctaaaaagcagaaatcagtgtggaca
gagcataagtctgtggacggcaaaacctattactacaacacggagaccaagcagtccacc
tgggagaaaccagatgatctcaaatcacctgcagagcaaatgctctctaagtgcccatgg
aaggagtacaagtctgacactgggaagccttattactacaactctcagactaaagagtca
cgttggacaaaacctaaagaactcgaagatctggaagctatgataaaggctgaggagaat
gggacggtggatgttgtagctcctggcactactcccattctcacagctcacacagatgca
gtgcttgctgtgcctgctgttccagaggctgacactaccatagcaacaagcgttgccgaa
gaacagccatctcagttgcctgtgcaggggggcgagggaggcagtgaggcaactgtgaca
tcacccaaggacacgcccacaaccgagacacaggccagtaatgacacatctaaagaagaa
aggccagagctggtgaagaaagtgtacaagtggaacaccaaagaagaagcgaagcaggct
ttcaaagaactgcttaaggagaagggtgttgcgtcgaatgcatcctgggagcaggccatg
aagatgatcattaatgaccctcgttacagtgccctgcccaagctgagtgagaagaagcag
gcttttaatgcctacaaggttcagacagagaaggaggagaaagaggaggccaggatcaaa
tacaaggaatccaaagagacatttcaacgcttcctggagaaccacgataaaatgacttcc
accacaagatacaagaaagcagagcagatgtttagtgatctggaagtgtggagctgtgtt
ccagagagagacagactggagatttatgatgatgttctcttctacttggccaagaaagag
aaggaacaagccaagcaactgaggaagaggaactgggaggcactgaagaacatcttggat
aacatggctaatgtcacataccgcaccacctggtctgaggctcagcagtacctgctggat
aaccccacatttgctgaggatgaagagctacagaacatggataaggaggatgcgctgatc
tgctttgaggaacacatccgcgctctggagaaggaagaagaagaggagaaacagaaatct
ctgctgagggagagacgcagacagcgcaaaaacagggagtctttccagaaatttctggat
gagttacatgaccacggccagctgcactccatgtcagcatggatggagatgtatccaacc
atcagttcagacatccgcttcgctagcatgctgggacagccgggctctacacctctggac
ttgttcaagttctatgtggaagatctcaaggctcgttatcatgatgagaagagaatcatc
aaagacatcttaaaggataaaggttttctggtggagatcagcaccagctttgaggacttt
ggctcagtcatcagctctgacaagagggccaccactctggatgcaggcaacattaaacta
gccttcaacagtcttctggagaaggcagaggcacgagagcgggagagagaaaaggaagag
gccagaaagatgaagaggaaagaagcagccttcaagagcatgctgaagcaggccacgccc
tcattggagcctgatgctacatgggaaggggtaagagagcgattcctaaaggagcctgct
ttcgaggacatcactctggagtcggagagaaagaggatattcaaagattttatgcatgta
ctagagcacgagtgtcagcaccatcactccaaaaccaagaaacactcaaagaagtccaaa
aagcaccacaggaaacgatctcgttctcgctcgggttctgaatctgaggaggacgagtat
cattcgaaaaagaagaaacgctcgacatcgaaatctccgtcagagcactcttcctcgggg
gaatccgagagaagctataaaaaatccaagaaacacaagaagaagggaaagaagagaaga
cacaagtctgcttccccagagtctgatggagaaaaggacagaaaaggacgagacaaagac
aaggataaagagaatgataagtccagagggaaaaatcgtagtgaatccaaacagaaatct
cccaagaggaaaacacctaaagaagagggaggatgggacacgtcaggcagtgaactgagt
gaaggagagctggagaagaggaggagaactcttctggagcagttagatgcaccttag
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