Ictalurus furcatus (blue catfish): 128608955
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Entry
128608955 CDS
T09387
Symbol
ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128608955 (ddx18)
03009 Ribosome biogenesis [BR:
ifu03009
]
128608955 (ddx18)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128608955 (ddx18)
Spliceosome [BR:
ifu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128608955 (ddx18)
Ribosome biogenesis [BR:
ifu03009
]
Eukaryotic type
90S particles
Helicases
128608955 (ddx18)
Pre-60S particles
128608955 (ddx18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
128608955
NCBI-ProteinID:
XP_053483172
LinkDB
All DBs
Position
6:complement(23300637..23311185)
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AA seq
659 aa
AA seq
DB search
MADLQMKLLRKKIQKRNEKNKERKLRQKQREEEENASKVIIEDVDPDATEETPAADTEQE
MADGNQKRESTQEDSGTQNSTKKKKKKKRKLNEAGEPTNMSVKKAKHENSEGDGAGLSEG
EEEQESAREVFKDEEVVGEKGDEEDDEECDGPELPSGLTGAFEDQSFASLVELVSENTLK
GVKEMGFENMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPAIELIYKLKFMPRNGT
GVVILSPTRELAMQTYGVLKELITHHVHTYGLIMGGSNRSAEAQKLANGVNILVATPGRL
LDHLQNTPSFMYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQTMLFSATQTRKVE
DLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFF
SSCMSVKYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIP
EVDWIVQYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGFLRFLKQAKVPLSEFD
FSWSKISDIQAQLEKLIEKNYYLHKSAQEAYKSYVRAYDSHSLKQIYDVQTLNLPQVALS
FGFKVPPYVDLNVHSSKGVKLQRRGGGGGFGYQKSKHVHKSKIFKHVNKGRGDRRQFSR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggccgatcttcagatgaagcttcttcggaagaaaattcagaaaagaaatgaaaagaat
aaagaacgcaagcttagacagaagcaaagggaagaagaagaaaatgcgtctaaagtaatc
attgaggatgtggatccagatgcgactgaagagactccagctgcagacacagagcaggag
atggcagatggaaatcagaagagagaatccactcaggaggacagcggcacacaaaacagc
accaagaagaagaaaaagaagaagcggaaactaaatgaagcaggagagcccaccaacatg
tctgtgaaaaaggccaaacacgagaacagtgagggtgatggggctgggctctctgaggga
gaagaggaacaggagagtgcaagagaggtatttaaggatgaagaagttgttggtgagaaa
ggagatgaggaggacgatgaggagtgtgatggaccagagcttccatctggactgacagga
gcgtttgaggatcagtcgtttgcatcactggtagagcttgtgagtgagaacacactcaaa
ggtgttaaagagatgggcttcgagaacatgactgagattcagcacaaaaccatacgcccc
ctactggagggaagagacgttcttgcagctgctaaaactggcagtgggaaaactctggcc
ttcctcattcctgccattgaactcatctataaactcaagttcatgcccagaaatggtact
ggagtggtgattttgtccccaacacgtgagttggccatgcagacatacggtgtactgaag
gagttgatcactcatcatgtgcacacatatggccttattatggggggcagtaaccgctca
gctgaagcccagaagctggccaatggagtcaacatcctggtagccacccctgggagactg
ctcgaccatctacagaacactcccagcttcatgtataaaaacctgcagtgtctgattatt
gatgaagcggatagaattcttgaggttggatttgaggaagaacttaaacagatcatcaaa
ctgctgccaaagaagagacagaccatgctgttctcagctacacagacgaggaaagtggag
gatctggcacgaatctctctgaagaaagagcctctgtatgtgggagtggacgataacaag
gatacagccactgtggaaggactggaacagggctatgttgtatgcccatcagagaagcgc
ttcctgctgctttttacattcctgaagaagaaccgcaagaagaagctgatggtgttcttc
tcctcctgcatgtctgtgaagtatcactatgaattgctcaactatatcgacctgcctgtt
atggccatccatggcaagcagaagcaaacgaagagaaccaccacatttttccagttctgt
aatgcagactctggcatcttgctctgcactgatgttgctgcaagaggactcgatataccc
gaggtggactggatcgtccagtacgacccgccagatgaccctaaggaatacatccaccgt
gtgggtcgaactgctcgaggtattaatggcagaggccacgccctccttatcctccgaccc
gaagagctcggcttcctgcggttccttaaacaggccaaggtcccattgagtgagtttgat
ttctcttggagtaagatctcagatattcaagcacagttggagaagctgattgagaagaat
tactacctgcataaatcagctcaggaggcatacaagtcgtacgtgagggcatacgattcc
cattccctcaaacagatctacgatgtacagacactaaacctcccacaggtggcgctgtcc
tttggcttcaaagtaccaccttatgttgacctcaatgttcacagcagtaaaggtgtaaag
ctgcagaggaggggaggaggtggaggctttggataccaaaaatcaaagcatgtgcataag
tcaaagatcttcaaacatgttaacaagggcaggggagaccgcagacagttctcccgctga
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