Ictalurus furcatus (blue catfish): 128609070
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Entry
128609070 CDS
T09387
Symbol
smarcal1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 isoform X1
KO
K14440
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ifu03036
]
128609070 (smarcal1)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
128609070 (smarcal1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HARP
SNF2-rel_dom
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
128609070
NCBI-ProteinID:
XP_053483381
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Position
6:27287183..27307612
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AA seq
863 aa
AA seq
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MSSSLTPEQQRKIEENRQRALARRAERLAQAVTAPHKPCQTQSHPAAGRNAKYTTSFPPK
PAASSAAHSVRQTQLIDPLPIPKRTEYQTSAPSSSFVPPKPKSSAVGFPEPKPISTADHF
FGPSVKTPTQPLFKKGPKPLDSGSAVSVKRPAVCVRGKCVPHSEERFRVEVGYNAELITV
FKNIPSRNYDPVTKMWNFNLEDYKQLMEEVGGLPSVSLKALEGMEGLDLSASSIRPRDSA
SLAAMMKLCQGWQKPGATVKGRCTLISRSRLEVDITYHADVIGIFKQMPSKNYDMKTRKW
SFLLEDYGMLMETLNNISDVEVEPLPRAVLQAFSSQFEKSHSRDAEIPEADLSGIDMTVT
RSLMPFQQHGVNFAVSREGRLLLADDMGLGKTVQAICIAAYYRKEWPLLIVTPSSVRFTW
AEALRRWLPSVAADSINVVVTGKDSLRSGLINIVSYDLLSKMGKQNLASPFGVLIMDESH
FLKNIKTARCKAALPLLKAAKRVILLSGTPAMSRPAELYTQILAVRPTLFPRFHDFGVRY
CDAKQLPWGWDYSGSSNLAELKLLLEECLMLRRLKSDVLSQLPAKQRKVVTVTTDGINSR
TKAALSAAARELTKGCHSKKQQKEALLVFFNHTAEAKIRAILEYISDMLECGREKFLVFA
HHKRVLDSISKELTDKAINHIRIDGSTPSADRHQLCEKFQFSEQSCVAVLSITAANMGLT
LHTADLVVFAELFWNPGILIQAEDRVHRIGQTSSVDIHYLVAKGTADDYLWPMIQEKMNV
LEQVGLSESNISDKAECASFHSKDPTQQRITEMFQRSFSEEDMDESALLEAVNDWEDTEQ
TDSVSHQENPFSGSPSKKRRIED
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcagtctaacgccggaacagcagaggaaaatcgaggagaacaggcagagagcg
ttggcgagaagagctgagagacttgcacaagctgtgactgcaccacacaagccgtgtcaa
acccaatcacatcctgcagcaggaagaaatgcaaagtacacgacgagctttcctccaaaa
cctgcagcaagcagtgcagcccacagtgtgagacagactcagctcatagatccacttccc
atccctaaaaggacggaatatcaaacgtcagctccgtcgtctagtttcgtcccccccaag
cccaaatctagtgctgttggattccctgaaccaaagccaatttccactgcagatcatttc
tttgggccgagtgtgaagacacccacccagcctttattcaagaagggacccaaacctctg
gactctggctctgccgtttctgtgaaaaggcctgcagtgtgcgtgagagggaagtgtgtt
cctcattcagaagaacgcttcagagtagaggttggctacaacgcagagctcatcactgtg
ttcaaaaacattccctccagaaactatgatcctgtcacaaagatgtggaacttcaacctt
gaggattataagcaactgatggaggaggtcggaggtctgccctcagtgtctttgaaggct
ctggaggggatggaaggtttggatttatccgcctccagcattcgccccagagactctgcg
tcactggcggccatgatgaaactctgccagggctggcagaaacctggggccacagtcaag
ggcagatgcacacttatctcccgctctcgcctggaagtggacatcacataccatgcagat
gtgataggtatctttaaacagatgccttcaaaaaactatgacatgaaaacaaggaaatgg
agtttcctactcgaggactatggcatgttgatggagactctgaacaacatctctgatgtg
gaggttgaaccgttaccacgtgctgtgcttcaggccttttcctcccagtttgagaagagc
cattctagagatgcagaaatacctgaagctgatctctcaggcatcgatatgactgtcaca
cgcagcctcatgccctttcagcagcatggcgtcaactttgcggtgtctagggaaggccgt
ctgctcctggctgatgatatgggcttggggaagacggtgcaggccatctgcattgcagcc
tactacaggaaagagtggccattgctgatagttactccatcctccgtccgcttcacctgg
gctgaggcgctccgccgctggttgccctcagtagcagcagacagcattaatgtggtggtg
acgggtaaagacagtcttcgctctggtctcatcaacatcgtcagctatgaccttcttagc
aagatgggaaagcagaatttagccagtcctttcggtgtgcttattatggatgagtcccac
ttcctgaagaacattaaaactgctcgctgtaaggctgctcttcctctgttaaaggccgct
aaaagagtgatcctgctgtcaggaactcccgctatgtcacgtccggctgagctctacaca
cagattctggctgtgaggccgacactcttccctcgtttccatgattttggagtgagatat
tgtgatgctaaacagctcccctggggttgggactattctggctcctctaatttggccgag
ttgaagttgttgttagaggagtgtcttatgttgaggcgattaaaatccgatgtgctgtca
cagcttcctgccaaacagcgcaaggttgtcactgtgactacagacggtataaactcccgt
accaaagccgcactctccgctgcagccagagaactcaccaaaggatgccacagtaagaag
caacagaaggaggctctactggttttctttaaccacacagcagaggccaagatcagagct
atcctggagtacatttcagacatgctggagtgtggacgagagaagtttctggtgtttgcg
catcacaaacgggtcctggacagcataagtaaagagcttactgataaggcaatcaatcat
atccgtattgatgggtctacaccctcagccgatcgccatcagctgtgtgagaagttccag
ttctctgagcagagctgtgtggctgtgctctctatcacagctgccaatatgggcctcacc
ctgcatactgccgaccttgtcgtgtttgcagagctcttctggaacccagggatattaatc
caagcagaggacagagtgcaccgtattggtcagaccagcagtgtggacattcactacctg
gtagccaaaggcacagctgatgactacctatggccaatgatccaggagaagatgaatgtt
ctagaacaggttggcttgtccgagtcgaatatttcagacaaagcagagtgtgccagcttc
cacagcaaggaccccacacagcaaagaatcacagagatgttccagagatcattctcagag
gaggatatggatgagtcagcgctattagaggctgtgaatgactgggaggacactgagcag
actgactcagtcagccaccaggagaaccctttctcagggagccccagcaagaaaagacgt
atagaagactaa
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