Ictalurus furcatus (blue catfish): 128609078
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Entry
128609078 CDS
T09387
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ifu04147
]
128609078 (col18a1a)
00535 Proteoglycans [BR:
ifu00535
]
128609078 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
ifu00536
]
128609078 (col18a1a)
Exosome [BR:
ifu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128609078 (col18a1a)
Proteoglycans [BR:
ifu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
128609078 (col18a1a)
Glycosaminoglycan binding proteins [BR:
ifu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128609078 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
128609078
NCBI-ProteinID:
XP_053483405
LinkDB
All DBs
Position
6:complement(27558593..27646706)
Genome browser
AA seq
1491 aa
AA seq
DB search
MLNKMSSLGLWLGVLVGLCIGHSHGWFWYDDSKHNSKSTPTPAYVTTLGTTLPTTVPTSK
PLRTEGTDASGVDVLAKGEEMGSGGGSRVGSALNEQSKPEVEHGSVLNADSGSGSWAVSV
PGVDPESGPTLKPANGSPLWENQEVNNVQANLSIGMDNNHVLAADTELEKNLTKVDLSQM
DEDRGNVSASPDDPITTVSLSQLIGYPLPEGVTKSYDPDSSGFVFDQNSKTGQLARAHLP
TSFFRDFSLLFNVKPTSTKAGVIFSITDTNQKIMYVGVKLSAVKDGKQKIVLFYTEPDSQ
ASYEAASFTVPSLVNYWARFSISVLDDKVTLYPSCDSEPKVLPFERSPDEMELEPGAGIF
VGQAGGADDDKFVGIIGDLKVVGDPHEAERYCEEEEDDSDGASGDYGSGDYKNKHTVSTT
SQPSNPLQQPPVKPTVVTVSKDVPKVLAVAGAKGEKGERGPKGDRGPAGPKGEAGSMTGS
GGGAKGEKGSLGEKGMKGAAGFGYPGVKGDQGPPGPQGPPGPPGPSADVVERGDGSVVVQ
GPRGPPGPAGPAGPEGEPGDPGEDGSAGPAGPPGFPGTPGDPGAKGEKGDRGEGLPGPRG
PPGLPGPPGPPSRSDSPTFLDMEGSGFGDLEGVRGLPGIPGPPGPPGPPGPPGPVGLTNV
SHATVSGVSGPSGPPGKDGAPGQPGLPGLPGTEGKPGLPGPKGEKGDTGELGLPGVVGEK
GAQGIPGYPGPPGQSGLAGLPGPMGPVGPPGPPGPSYHAGFDDMEGSGVNFFGGVPGVRG
PEGKQGPPGLPGQPGIPGQKGEKGSEGLPGTSGHPGLDGFPGPQGPQGERGFKGERGDPG
RDGVGHPGLPGPPGPPGQIIYRSADGSGIPGQAGFPGPMGPKGERGDPGAPGNGIKGEKG
EPGVVIGPDGSPLFLGATAGQKGERGPAGSVGPPGPYGPPGMKGEIGMPGRPGRPGMLGS
KGEKGESGSGYSYPGPPGPPGPPGPPGPLAYPSAVDRFGRYEDSRTVYPGAKGEKGDRGV
PGLPGTPGNFDIYTLKNELKGERGDTGLKGEKGEPGGQYGSHYGGVQGPPGPPGPRGDSI
RGPPGPQGPPGPQGVGYDGRPGNPGPPGPPGPPGSPSLPGAHRPTVSIPGPPGPPGPPGL
PGQNAGVTILRTFDLMLATAQRQPEGALIYIMDKSDLYVRVRDGVRQVMLGTYNPFYRDS
HNEVAAVQPPPVVQYSQSHSANNGAEHYSHVVDSPIRQPDSHGSEHSQPAIDPQYNTHYS
SHPDTRYPPHPDHRFPARTDQPYIPVQPERYPIPPVLRPSTPIHQPEGHVHTSGPGLHLI
ALNSPQVGNMRGIRGADFLCFQQARAAGLKGTFRAFLSSKLQDLYSIVRKSDRNTLPIVN
LKDQVLFSSWESLFGDSEGRLKTSIPIYSFDGRDILRDSAWPEKMIWHGSSGKGHRQMDN
YCETWRTSDLAVMGLASSLQAGQILQQKPSSCSNNFIVLCIENSYITQSKK
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgtcttcgcttggactgtggcttggtgtgctggtgggcctgtgcatc
gggcactcacatggatggttttggtatgatgactcaaagcacaacagcaagagcactcca
acaccagcctatgtgactactttaggcacaactcttccaacaactgtacctacaagtaaa
cccttgaggacagaaggcacagatgcttccggtgtggatgtccttgcaaagggtgaggag
atggggagtggagggggatctagagttggttcagccttgaatgagcagtcaaagcctgag
gtagaacatggttctgtgttaaatgctgactctggatctggatcatgggctgtttctgtg
cctggcgttgaccctgaatctgggcctacacttaaacctgccaatgggtcccctctgtgg
gaaaatcaggaagtcaacaatgttcaagccaatttatctattggtatggataataaccat
gttcttgcggcggatactgagctggagaagaatctgacgaaagtggatctctctcaaatg
gatgaagaccgtggaaatgtttccgcttcacctgatgaccccattacgacagtttcgctc
tcacagctgattggttaccctcttcctgaaggcgtcaccaaaagttatgacccagactct
tcaggctttgtgttcgatcagaactccaagaccggtcagctggcccgtgcgcacctgccc
acatcttttttccgtgacttctccctcctgttcaacgtgaagcccacttccaccaaagct
ggagtcatcttctcaatcactgacaccaaccagaaaatcatgtatgtgggggtgaagctt
tcagccgtgaaggacggaaagcaaaaaattgtcctgttctacactgagccagactcccag
gcatcctatgaggctgcaagcttcactgttccctcccttgtcaactactgggctcgtttc
tctatcagtgtgttggatgataaagtcaccctgtaccccagttgtgactccgagcccaag
gtgctcccctttgagcgttctccagatgaaatggagttggaaccaggagccgggatcttt
gtgggtcaagctggaggagctgatgatgataagtttgtgggtattattggagatttgaag
gtggttggagacccccatgaggctgaacggtattgtgaggaagaagaggatgattccgat
ggagcctcgggtgattatggaagcggtgattacaaaaacaagcacacagtctcgaccaca
agtcaaccttccaatcccctacagcagccaccagtaaaacctactgtggtaacagtgagc
aaggatgtgcccaaagtgctagcagttgcaggagcaaaaggtgagaaaggagagagagga
cccaaaggagaccgtggtcctgcggggcccaagggggaggcagggtccatgaccggatct
ggaggaggtgccaaaggagagaaaggcagcctaggagaaaagggaatgaagggtgctgca
ggatttggctatcctggggtaaagggtgatcaaggacctcctggtccacaaggtcctcct
ggtcctcctgggcccagtgctgacgttgtggagaggggagacggctcggtagtagtacaa
ggaccaagaggacctccagggccagcggggcctgccgggcctgaaggagaacctggtgac
cctggtgaagatggaagtgctggaccagccggaccacctggtttcccaggaacccctgga
gatcctggagctaaaggagaaaaaggtgaccgtggtgaaggtcttcccggacccagggga
ccaccaggacttccaggacctccaggacctccctctcgctcagacagccctacatttttg
gacatggagggctctggctttggtgatctagagggtgtacggggattgcctggtattcct
ggtcctcctggtccacctggcccacccggacccccaggacctgtaggtctcactaatgtt
tcacatgctactgtttctggtgtgtctggaccttctggtccacctggaaaggacggcgct
ccaggacaaccgggacttccaggtctccctggtactgagggaaaacccggcctgcctggc
cctaaaggagagaagggtgatactggcgagctcggcttacctggagttgtgggagaaaag
ggtgcacaggggattccaggttatccaggaccacccggacagtctggcctcgctggcctt
ccaggaccaatgggacctgtgggaccacctgggcctccagggccgagctaccatgctgga
tttgacgacatggagggttcaggtgtaaactttttcggtggcgtgcctggagtcagagga
cctgaaggcaaacagggtccacctggtctaccaggtcagcctggtatacctgggcagaaa
ggagagaaaggcagcgaggggcttccgggaacatctggccatcctggacttgatggattt
cctggaccacagggaccccagggagagcgtggatttaaaggagaaagaggtgatccaggt
cgtgatggtgttggccatccaggccttccaggaccacctggacctccaggacaaattatc
tatcggtctgcagatggttctggcatccctggtcaagcaggattcccaggaccaatggga
ccgaagggtgagagaggagacccaggtgctccaggaaatggcattaagggtgagaaaggg
gaacctggtgtggttattggacctgatggaagtcctctatttcttggtgcgacagctggg
caaaagggggagaggggacctgctggatcagttggacctcctggaccatatggtcctccc
ggcatgaagggtgagatcggaatgccaggcaggcctggtcggccaggtatgcttggaagt
aaaggagaaaaaggagagtcgggctcaggatacagttatcctggtccacctgggcctcca
ggtcctccaggtcccccaggacccctagcatacccttcagctgtggacagatttggtaga
tatgaagactctagaacagtgtacccaggtgcgaaaggagagaagggagaccgtggggtc
cctggtcttcctgggacaccaggcaactttgacatttacactctgaagaacgagctgaag
ggtgagcgtggagacacaggactgaaaggagagaagggtgagccaggtggacagtacggt
tctcactacggaggcgtgcagggaccaccaggacctcctggtcctcgtggagattcaatc
agagggcctcctggtccacagggtccaccaggacctcagggtgttggttatgatggccgt
ccaggaaacccaggaccaccaggacctcccgggccacctggttcaccctcattacctggt
gcccacagacctacagtcagcattcctggccctcctggtcctcctggtccacctgggttg
cctggccagaatgctggagtgacaatactgagaacatttgacttaatgctcgcaacagca
cagagacaaccagagggtgctctcatctacataatggacaaaagcgatctctatgtcaga
gtgcgtgatggcgtcagacaagtcatgcttgggacttataaccccttctatagagattca
cacaatgaggtggcagcggtacagcctcccccagtagtacaatactcacagagccactca
gcaaataatggagcagagcattactcccatgttgttgactctccaatccggcagccagat
agccacgggagcgagcattctcagccagccattgatccacagtacaacacacactactcc
tcacacccagacaccaggtacccacctcacccggaccacagatttccggcacgcactgat
caaccgtacatccctgtacagccagagaggtatcccatccccccggtcctcagacccagc
acacccatccatcagcctgagggtcatgtacacacatcgggaccagggctgcatctgatc
gccctgaacagccctcaggtggggaacatgaggggcatccgtggcgcagacttcctgtgc
ttccagcaggcacgcgctgccggcctgaagggaacatttagggctttcctgtcctccaaa
ctgcaggatctctatagcatcgttcgcaaatctgacagaaacacactgcccattgtcaac
ctcaaggaccaagtgctgttcagcagctgggaatcgctgttcggtgattcagagggcagg
ttgaagaccagcatacccatatattcatttgatggcagagatatcctcagggacagtgct
tggccagagaagatgatctggcatggctccagtggtaagggtcaccgtcaaatggataac
tactgtgagacgtggaggacgtcggatctcgccgtgatgggtctggcctcatctctgcag
gctggccagatcctacagcagaaacccagcagttgctccaacaacttcatagtgctgtgt
atcgagaacagctacatcacacagtctaagaagtaa
DBGET
integrated database retrieval system
