Ictalurus furcatus (blue catfish): 128609222
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Entry
128609222 CDS
T09387
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128609222 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128609222 (sf3b1)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128609222 (sf3b1)
Spliceosome [BR:
ifu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
128609222 (sf3b1)
Complex B
128609222 (sf3b1)
Complex C
U2 SnRNP specific factors
128609222 (sf3b1)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
128609222 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
GST_N_4
Motif
Other DBs
NCBI-GeneID:
128609222
NCBI-ProteinID:
XP_053483678
LinkDB
All DBs
Position
6:32166429..32176926
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AA seq
1314 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALQEEGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEEDDEEDSSTTLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKISDREDEY
KRRRQKMIISPERHDPFADGGKTPDPKMPARSYMDVMKEQHLSKEEREIRLQMAEKAKSG
DLKAVNGSAASQAAAPKRKRRWDQTADQTPNTTPKKVSSWDQADSSVETPGHTPGHTPSN
SRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSVRK
NRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSST
PLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELDAMFPE
GYKVLPPPAGYVPIRTPARKLTATPTPIGGMTGFHMQTEDRTTKQMNDQPSGNLPFLKPD
DIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGP
LFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYAR
VEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKA
VCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIA
ALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVM
LILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNY
RQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEE
QLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQ
AADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMT
PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK
KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA
VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC
LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNPFVRYELDYFL
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagatatcgaggcgcagatcctggagatccagggc
atgaaggcggcgctgcaggaggagggagatcagggtgtcggcctggattctaccggatac
tacgaccaagagatctacgggggaagcgacagtcgttttgccggatacgtcacatctatt
gctgccaatgagcaggaggaggatgatgaggaggactcttctacaactctgcttggtcag
aagaaaccggggtatcatgctccggtggcgatactcaatgccattcctcagtcagatgag
cagtacgatccttttgccgagcatcgcccacagaagatctccgatcgcgaagacgagtac
aagaggcgcaggcaaaagatgatcatctcccctgagcgtcacgaccctttcgcagacggg
ggcaaaacgccagatcccaagatgcctgcccggtcgtatatggatgtgatgaaggagcag
catctttctaaagaagagagagaaatcaggctgcagatggcagaaaaggcaaaatcaggt
gacctgaaagcggtcaatggctctgctgcgtctcaagccgctgctcccaagcgcaagcgt
cggtgggaccagactgctgaccagaccccaaacactactccaaagaaagtgtccagctgg
gatcaggcggatagctcagtagagacaccgggacacacacccggacacacgccttcaaac
agtcgctgggacgagacgcccggtcgtcccaagggtagcgagactcctggagccaccccc
agttcacgcatgtgggaccccacgcccagccacacacctgccggcgccgcaacgccgggc
cgagacacccccgggcacgccacgcccggtcacggcggtgccacgtccagtgtgcgcaaa
aaccgctgggacgagactccgaagacagaaagagagacacctggccatggcagtggctgg
gccgagacccctcgtacagaccgaggggatgagtctgtcggagagaccccaactcctgga
gcaagcaaaagaaagtcccgttgggatgagactcctgccagtcagatgggctcctccact
ccgctgctcacccctggaaagacccctattggcacaccagctatgaatatggccacgccc
actccagggcatctgatgagtatgactcccgagcagcttcaggcgtggcgctgggagaga
gagattgacgagcggaaccgtccgcttactgatgatgagctggacgcgatgtttccggaa
ggctacaaggtccttcccccaccagcaggctatgtgcccatccgcacccctgcccgtaag
ttaaccgccaccccgacgcccatcggcggcatgacaggcttccacatgcagaccgaagac
cgaaccaccaaacagatgaacgaccagccgtccggcaacctgcctttcctgaaacccgat
gacatccagtacttcgacaaacttctggtggaggtggacgagtccactctcagtccagag
gagcagaaggagcgcaagatcatgaagctgctcctgaaaataaaaaacggcacccctccc
atgaggaaggctgctctcaggcaaatcacagacaaggccagggaatttggtgccgggcct
cttttcaatcagattctacccctgcttatgtctccaacccttgaagatcaggagcgccat
ctgttggtgaaggttatcgaccgcatcttgtacaaactggacgacttggttcgaccttat
gtccacaaaatccttgtcgtgattgaacccttgctgattgatgaagattactacgctagg
gtagaaggcagagagattatctctaacttggcaaaggctgctggtctggccactatgatc
tccacgatgaggcccgacatcgacaacatggacgagtacgtgagaaacacgaccgctcgt
gcctttgctgtcgtggcgtccgctctgggtattccttccctcctgcctttcctcaaagcc
gtgtgtaagagcaagaagtcgtggcaggctcggcacacgggcattaaaatcgtgcagcag
atcgccatcctcatgggttgtgccatcttgcctcatctccgcagcttggtggagattatc
gaacacggtcttgtggatgagcagcagaaggtgcgaaccatcagtgctttggccatcgct
gctcttgcagaggctgccacaccctacggtatcgagtcttttgactccgtgctcaagccc
ctttggaagggtatcagacaacaccgaggcaagggtctggctgctttcttaaaagccatc
ggatacctgattcctcttatggatgccgagtacgccaactactacacgagggaggtgatg
cttatcctcattcgagagttccaatctccagatgaggaaatgaagaagattgtcctgaag
gtggtgaagcagtgctgtggaacagacggtgtggaggctaactacatcaaaaccgagatc
ctgccgcctttcttcaaacacttctggcagcaccgtatggctttggacagacgtaactat
agacagttggtagacactacggtagagctggccaacaaagtcggtgcagcagaaatcatc
tcgaggatcgtggacgacttgaaggatgaagctgagcagtacagaaagatggtgatggag
acaatagagaagatcatgggtaacctgggagcagcagacatcgaccacaaactggaggag
cagcttattgatggcatcttgtatgctttccaagaacagaccactgaggactctgtgatg
ctgaacggtttcggaacagtagtgaatgctctgggcaagcgagttaagccctacctgcct
cagatctgcggtaccgttctgtggcgtctaaacaacaagtcggccaaagtccgtcagcag
gccgccgacctcatttctcgcacggctgtggttatgaagacctgtcaagaggagaagctc
atgggtcatttgggtgtcgtgctgtacgagtacctgggagaggaataccctgaagttctt
ggaagcatcctcggagcacttaaagctatcgttaatgtcattggtatgcacaagatgacg
cctccgattaaggatttacttcctcgactgacaccgatcctgaaaaacagacacgaaaag
gtgcaagagaactgcatcgatctcgtgggcagaattgctgacagaggtgcggagtacgtg
tctgccagggagtggatgcgaatctgtttcgagctgctggagctgctgaaagctcacaag
aaggcgatccgacgagccacggtcaacaccttcggctacatcgccaaggcgatcggacct
cacgatgtgcttgccacgctgcttaacaacttgaaagtgcaagagcgtcaaaaccgagtc
tgtacgacagtagcgatcgccatcgtggcggaaacgtgctcgcccttcaccgtactccca
gcgctgatgaacgagtaccgtgtacccgaactgaacgttcagaacggtgtgctcaaatcc
ctctccttcttattcgaatatatcggagagatgggtaaggactacatctatgccgtgacc
ccgttattggaggacgctctgatggacagagaccttgtgcataggcagacggccagcgct
gtagtgcagcacatgtctctgggtgtgtatgggttcgggtgcgaggactccctcaaccac
ttgctcaactatgtttggccgaacgtttttgaaacgtcgccgcacgtcatccaagccgta
atgggagccctcgagggactccgtgtggcgatcggaccgtgtcggatgttgcagtattgc
ctgcagggtttgttccatcctgcacggaaagtccgtgatgtgtactggaagatttataat
tccatctacattggctcccaggatgctctgattgcacattatcccctcgtctacaacgac
gagaagaacccgttcgtccgctacgagctggattactttctgtga
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