Ictalurus furcatus (blue catfish): 128609562
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Entry
128609562 CDS
T09387
Symbol
smarcd3a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128609562 (smarcd3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128609562 (smarcd3a)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128609562 (smarcd3a)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128609562 (smarcd3a)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128609562 (smarcd3a)
PBAF complex
128609562 (smarcd3a)
GBAF(ncBAF) complex
128609562 (smarcd3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
128609562
NCBI-ProteinID:
XP_053484075
LinkDB
All DBs
Position
7:7084414..7115730
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AA seq
505 aa
AA seq
DB search
MATEDSTGGARKATKSKLFEFLVHGVRPGMTSGARMPHQGAPMGPPGPPYGGTPPIRPGM
PNPTLDPNRKRPTTTPPVQASPVQNRPRKKPLGFQGANEVSARPLDLREAQSEPAIGSNA
KRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTILRKRVDIQEALKRPMKQKRKLR
LYISNTFNPAKPDSEDSEGSIASWELRVEGKLLDDPGKQKRKFSSFFKSLVIELDKDLYG
PDNHLVEWHRTPTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKLDPRLARLLGIHTQ
TRSCIIQALWQYVKTNKLQDSHEKEYISCDKYFQQIFDCPRLKFSEIPQRLTNLLLPPDP
IVINHVISVDPNDHKKTACYDIDVEVDDPLKTQMNGFLLSTANQQEIASLDNKIHETIES
INQLKIQRDFMLSFSRDPKGYIQDWICSQNRDLKLMTDVVGNPEEERRAEFYNQPWSQEA
VSRYFYCKIQQRRQELEQALAMRTT
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggccacagaggattccactggcggtgctcgcaaagccaccaagagtaaactgttcgag
tttctcgtccacggagtgcgtccaggtatgacctcaggggcccggatgccccatcaaggt
gcccctatgggtccacctggccccccgtatggcggaacacccccgattcggccggggatg
cccaaccccacactggacccaaatcgcaaacggcccaccaccaccccaccggtgcaagcc
tcgcccgtccaaaaccggcctagaaagaaaccactgggattccaaggagccaatgaggtt
tctgcaagaccattggacttgcgagaggcccagtctgagccagcaattggatccaatgcc
aagagaaggaaaatggcagacaagattctccctcagaggatccgtgagctggtgccagag
tcgcaggcgtacatggaccttttggcttttgagcgcaaactggaccaaactattttgagg
aagcgggtggatattcaagaggcgcttaagagaccgatgaagcaaaagcggaagctccga
ctgtacatctccaacacgtttaaccctgctaagcctgattcagaggactcggagggcagc
attgcatcctgggagctaagagtagaaggcaagctgctagatgatcctggaaaacaaaag
aggaaattttcttctttcttcaaaagcttggttattgagctggataaggacctgtatggc
cctgataaccacttagttgagtggcatcgcactcctacaacccaggagacggatggcttc
caggtgaagaggcctggagacgtgaatgtgaggtgcacgctgctcctcatgctcgattac
cagccaccccaatttaagctggaccctcggctcgctcgtcttctgggcatccacacacag
acccgctcctgcatcatccaggccctgtggcagtatgtcaagactaacaagctgcaggac
tcccatgaaaaggaatacattagctgtgacaagtatttccagcagatcttcgactgcccg
cgtctgaagtttagtgagattcctcagaggcttactaatctactgctgccccctgaccca
atcgtgatcaaccatgtcatcagtgtggaccccaatgaccacaagaagacagcctgttat
gacatcgatgttgaggtggacgatcctttaaagacccaaatgaatggttttctgctctcg
acggctaatcagcaggagatagcgtcactagacaacaagatccatgagaccatcgagtcc
atcaaccagttgaagatccagagagatttcatgctcagcttctccagagatcccaagggc
tacattcaggattggatctgttcacaaaaccgagaccttaagttaatgactgatgtggtg
ggaaacccagaggaggaaagaagagcagagttttataaccagccctggtctcaagaagct
gtgagtcgctacttttactgcaagatccaacaacgaagacaagagctcgaacaggccttg
gcaatgcgcaccacttaa
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