Ictalurus furcatus (blue catfish): 128609978
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Entry
128609978 CDS
T09387
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ifu00536
]
128609978
Glycosaminoglycan binding proteins [BR:
ifu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128609978
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128609978
NCBI-ProteinID:
XP_053484927
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Position
7:complement(16458443..16628373)
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AA seq
660 aa
AA seq
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MKASEATNQLRCAAKMESDSGFSGKRHYLRAITGAIPFVFSVASVAFCILLGIQTSDIKN
RMLDFESSNGERLLHPFAEVSIDEFNSMVEERVDEVLSQRSYEHFARIRTARQVSPECNC
PPGPPGKRGRRGHNGEPGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGAPGLQGDPGTPGELGPMGPEGPPG
LKGSTGSPGIPGIDGLKGDRGEQGEKGDMGEEGPKGNVGEKGDAGSSAAGIKGEPGEPGR
SGQKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGEPGPPGKGERGETGPV
GPKGAEGEPGTPGLKGSKGETGDKGDVGLTGPTGPAGEKGDQGTTEIIDYNGNIQEALQK
ITTITVTGPPGPPGPIGPQGIKGDQGPPGLPGLDGERGHKGSKGDMGMPGMSGDKGSVGL
PGLPGFNGQKGEKGDNGMPGPQGPSIIGPPGALGPHGPPGPMGPHGFPGQKGEAGLPGLK
GARGEPGYKGDRGPLGLPGTDGPTGASGPAGPKGDRGEKGVTGEPGPRGPYGLPGAAGTP
GLDGLPGLRGEKGDVGERGEKGFRGFKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcttcagaagccacaaatcagctcaggtgcgctgcgaaaatggagagcgactcg
ggcttcagcgggaagcgacattacctccgagccatcaccggtgcgatcccgtttgttttc
tccgtcgcttctgtcgccttttgcatcctcctggggattcaaaccagtgacataaagaac
agaatgctagatttcgaaagcagcaacggggagcgccttttacatccgtttgctgaggtt
tccatagacgagtttaactcaatggtggaggagagagtggacgaggtcctgtcacagcgc
tcctatgaacactttgcacgcataaggactgcacgtcaagtctcacctgaatgcaactgc
ccaccaggcccaccgggaaagcgaggaagaagaggacacaacggagaacctggaccccct
ggtccaccaggtccaaaaggtgagaagggagatcaaggagaccagggaccgcggatggtc
ttccctaagatcaatcatggctttctttctgctgatcagcagctcattaagcgtcggctc
attaagggtgatcaaggtcaagcaggccctccaggacctcctggacctccaggtcctcct
ggccccaggggacccccaggagacacagggaaggatggtcccaggggagctccagggcta
caaggagacccaggaaccccaggagagctcggccccatgggacctgagggccctccagga
ctcaagggatccactgggtcacctggcattccaggtattgatggattgaagggtgacaga
ggagagcaaggtgaaaagggtgatatgggagaagaggggccaaaaggcaatgttggtgag
aagggtgatgcgggttcttctgctgctggcattaagggtgaaccaggtgaaccaggacga
agtgggcaaaagggagaaccaggacttccagggctgcctggacttcccggaataaagggt
gaacctggctttctcggcccacagggtgagccagggctgccaggactacctggaacaaag
ggagaacgaggagagccaggaccgccaggaaagggtgaacgtggggagacaggcccagtt
ggaccaaagggagcagaaggggagccaggaacaccgggactcaaaggatccaagggggaa
actggagataaaggagatgttggacttacaggacccacaggtccagctggagagaaaggt
gaccagggcacaactgaaataattgactacaatggaaacatccaagaagcgcttcagaag
ataaccactattacagtgacgggtccccctgggcctcctggaccaattggaccacagggc
attaagggtgatcaaggtcctccaggtcttccaggtcttgatggcgagaggggtcacaag
ggttcaaaaggagacatgggaatgccaggaatgtctggcgataagggatctgtaggattg
cctgggctaccaggtttcaatggtcagaaaggtgaaaaaggtgataatggcatgcctgga
cctcaaggaccatctattattggccctcctggggcacttggtccacatggtcctcctggt
ccaatgggcccacatggattccctggacaaaagggagaagcaggtttgcctggtttgaag
ggagcacgtggggagcccgggtataagggtgaccgtggacccctgggcctccctggtaca
gatggcccaactggtgcttctggtcctgctggtcctaaaggagatagaggtgagaaaggt
gttacaggtgaacctggaccgagaggaccatatggattacctggtgctgctgggacacct
ggcttggatgggttaccaggcttaaggggagagaagggcgacgtgggggaaagaggagaa
aagggtttccggggctttaagggtgaaaagggtgaaccaggccagcctggtctggatggg
ctggatgccccgtgccaattggggccagatggattaccaatgcctggttgttggcaaaag
tga
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