Ictalurus furcatus (blue catfish): 128610004
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Entry
128610004 CDS
T09387
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128610004 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
ifu04091
]
128610004 (frem1a)
Lectins [BR:
ifu04091
]
C-Type lectins
Lecticans
128610004 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
128610004
NCBI-ProteinID:
XP_053484977
LinkDB
All DBs
Position
7:complement(17780976..17807860)
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AA seq
2188 aa
AA seq
DB search
MVLQQRTHMWPFWFLLLLGLLHFCMCSLVKTNHGLRVKRGQSAFLQEGDLQFHIPRERDT
CKLEVVLNEPITQRVGTLSPQVFDCHYLADEVKYTHNGCPILKEDTVKLRLYRFTETETY
SELFSLHIEIMEPDCNVIKLGPQTLQIPEFYGLSNMLDGNVMSFHYEHRPNIECTIRVMT
PDSGLPGHGQLVTGEPDKLEGPRGDEPDSFVSIRQQLENKARSKCKSEDCLKGLKLVTIT
KVSCEEFLMMGIRYQHTDPPSPDIDYIAIKLDLTDTRSRSIIQSEQAWIPVTIKGSVPNQ
PPKPAFMSMFILEVDQFILTPLSTAILDAVDAETPKNRLVFNITKPPSEGFITHLSDHTK
PISSFTWVDLNEMLISFQPPNSSHTQRRNYEVELEVHDFYFEKSSPIIVHVSVRTADTNA
PRVSWNMGLSLLEGQSRPITWDQLQIVDNDDLKTVRIITVDGLQHGRLTVRGGKGFMFTV
SDIKAGVVRYYHDDSDTTKDFVVFRITDGRHQTRHKFPINILPKDDSPPFFITNMVLELS
EGQTALLRGSILQASDMDSSDDYILFNITKPPQAGEIMKLPGPGITGYPVMRFLQKDLFH
SIIYYRHFGNEVFDDSFEVVLSDFHDPPNLSEPQVIVIQIQPVPDQPPKEAPGVTRHLIV
KETDVVYLTKKQLHFVDVESPDCELTYTVTIPPFYTTTYGGHDAGRLFLVDSIPKLAKDP
NAPVLRLFTQHTVNYMKVAYMPPFQDIGPYPQHIQFVLSVTSEQGRTTTGICFNITVLPV
DNQSPEVHINQLTVDEGGECWVSADHLHLTDVDSLEDSLRVALKRRPQHGDVYLDGVPLS
QGQTFTVRDLKSLKVRYRHDSSETEEDNIKCIATDGVNSVDFVLHIKVTLVNDEMPALVP
GLKTVLECAEGQDVVITIEYIYATDVDSDDSKLNYLIARQPYHGVVLKNGIVVDRFFQED
IEARIISYKHTGLEVGLLPRRDTITFVISDEQTAPVPSCCFDRPPQFNRQTKHPQDSLLI
YDLNITVYPVDNQPPSIVIGEVLQVDEGGSTSITVAHIAASDQDTPLEDLQLVLVSPPQF
GYIENILPSPGFEKSNMGISIASFLYRDVLNGHINYVQSRHQRTEPTADQFMLYISDGEH
QSSAIPFYIIIKPTNDESPDFLARNISVREGDMKELDASIINAVDLDVPRDQLTFRIIQQ
PQHGAIMGGLHGNDVAHYRRSIQNHGTEVHVQVFTMEDLRNGMMLMYLHDDSESEQDSFI
IQLSDGKHQLQRDILVKVMPINDEKPCIIRNTGIEVEPGEARLISSAVLSAHDNDTPSTN
IIYVFESVPVHGLLQIKAGLDWRTLTTEMNCSQEAVDMNLLRYVHTAQPGAHTQDFFIFH
LQDGRNRSPAQHFHITIKELQKGDIALFVKLVKASRGEHVVITTDVLLAVDGTERPEELL
YVITVPPVHGHMEYIKHTGIPIHSFSQLDIAANLVCYVHDNRPTSPRDTVQFVISNGKST
RNGTLEILVEMTDRVLPTLMQKAGLQVPQGSTITITTDNLHLSDPDTPPHCLIFILVQPP
QYGQLIMKGFPLAPGSNFTQQNLLDLDVAYRHLGGASQIDRFTFIAADSTARGFLVRGKA
HTDPVIFSIQVCRIETLDRFAPRMMVLETLWKVELLKDGRYGIFISSRELKAQDMNAADE
NLIFHILRAPYFGYLENATNGAFVRQRFTQRDLNKRNILYMINLSLEALSDSLEFAVSDP
LGNTGPSHKLEFSWASVELTKTEYRVCEGKGPLSLTVQRKGNMQDSSYVTLKVKELTAAI
GKDFISAPSTLIQFDPGVASRQWKVELVQDFLEEAEEMFEVTLDSAVGAIQRGNNKAVIT
IMDNKNGQCAEKQSPKGPDLQGKELQAGSYPKHGSIQVETLPITLGDGSESVRGNNLAQV
ITPFSKKRLRTNGNGKSIRPSSIIQSGSDVLYTYHGIMSLTVEDETTAFNSGKKAQVQVT
SRGQQRSLPGKTTSHLTALPTPNRRGTAPQNIFSRPEPKVCTPEMAGFLHFNASLGQLLQ
CNGISWKPWAATDETVNAQKCPQGWTYHSHHCYLLITERKATWNNAARTCRESFQGNLVS
VLSKADMDWLWDFSERKPFWIGLNDRVSKGQWEWMDGEPVTYTNWRRGPPRTKIKSNKKC
VLVWRKTKWQIRDCKTGKGHHFVCYVKT
NT seq
6567 nt
NT seq
+upstream
nt +downstream
nt
atggttcttcaacaaaggactcatatgtggccattttggtttctgcttttgctgggactt
ttgcacttttgcatgtgctccctggtgaagaccaaccatggcctgcgggtgaagagagga
cagtcagctttcttgcaggaaggagatctgcaattccacatacccagagagagggatacc
tgcaagctggaagtggttctgaatgaacctattacccaacgtgttggcacactgtcccct
caggtttttgactgccactatttggctgatgaggtgaaatatacgcataatggttgtcct
attttaaaagaagatactgtcaaacttcgattgtacagattcacagagacagagacatat
agtgaattgttctcactccatattgagatcatggaacctgactgtaatgttataaagttg
ggaccacagacgttgcaaattccagagttctacggcctttccaatatgcttgatggcaat
gtgatgtccttccactatgagcatcggcccaacatagagtgtactattagggtgatgaca
ccagactctggtctacctggacatggtcagctggtcactggtgaacctgacaagctagaa
gggccaagaggagatgagccagacagctttgtctcaattcgacaacaattagaaaataaa
gccagatccaaatgcaagagtgaagactgtttaaaaggactaaaattggtgacaattaca
aaagtgtcttgcgaagaattcttaatgatgggcattcgctatcagcatactgatcctcca
tcacctgatattgattacattgctatcaaactggatctcacagacacgaggagcaggagc
ataatccagtcagaacaagcctggatccctgtgaccattaaagggtctgttcccaaccag
cccccaaagcctgccttcatgtccatgttcatcctggaagtggatcagttcatcctgact
ccactgtccacagccattcttgatgcagtagatgctgagaccccaaagaacaggctggtg
ttcaatatcaccaagcctcccagtgagggcttcatcactcatttgtctgatcacaccaag
cccatctcatctttcacctgggtggacctcaatgaaatgcttatcagcttccagcctcca
aattccagccatacacaacgcaggaactatgaggtagagcttgaagtccatgatttctac
tttgagaaaagttcacctattatagtacatgtgtcagtcaggacagcagacacaaatgca
ccaagagtgtcatggaacatgggtctcagtctcctggaagggcagtctcggcccatcacg
tgggatcagctgcaaattgtggacaatgatgatctaaagactgtaagaatcatcactgtg
gatggcttacagcatggaagactgacagtcagaggtggaaaagggttcatgttcactgta
agtgacatcaaggctggagtggtgcgctattatcatgatgacagcgataccaccaaagac
tttgtggtctttcggatcactgatggccgccaccaaaccagacataagttccccatcaac
atcttacccaaggatgacagtccaccattcttcatcaccaatatggtcctggaactctct
gagggacaaacagctcttcttagaggttcgatacttcaagcatcagacatggactccagt
gatgactacatcttattcaatatcactaagcctcctcaagcaggggagatcatgaagttg
ccaggtccaggaattacaggatatcctgtgatgcgttttctacaaaaggatctctttcat
tccatcatctactacaggcactttggcaatgaagtatttgatgactcttttgaagtggtg
ttatctgacttccatgatcctcccaatctctcagagcctcaggtcattgtgattcaaatt
caacctgtcccagatcagccacctaaagaggccccaggagtaactcgacatctgatagtc
aaagagacagatgtggtatatttaaccaagaagcagttgcactttgttgatgttgagtca
ccagactgtgagcttacctacactgttaccatcccacctttctacactaccacatatggg
ggacatgatgcagggcggttgttcctggttgacagcatcccaaaattggctaaggatccc
aatgcccctgtgcttagacttttcacacagcatactgtcaactacatgaaagtagcttac
atgccgcctttccaagatattgggccttatcctcagcatattcaatttgtgctgtctgta
accagtgagcagggccgaactacgactggaatctgtttcaatattacagtgctgccagta
gacaaccaatccccggaggtgcacattaaccagttaactgtggatgaagggggagaatgc
tgggtcagtgcagatcacttgcacctgactgatgtggattctctggaggactcactacgt
gtggcgctgaagagaagacctcagcatggggacgtgtatctggatggtgtacccctgagt
caaggccagactttcactgttagagacctgaaaagtctaaaagttagatatcgccatgat
agttcagagacagaggaagataacattaaatgtatagccacagatggggtgaattcagtt
gactttgttttacatattaaggtaacactagtcaatgatgaaatgccagcactggtgcca
ggcttgaagactgttctagagtgtgcagagggacaggatgttgtgatcaccatagagtac
atctatgcaacagatgttgatagtgatgacagcaaactgaactatctgattgctcgtcag
ccatatcatggtgtagtgctaaagaacggtatagtggtagacaggttctttcaagaagat
atagaggccaggatcatcagctacaaacacacaggtctggaggttggattgctccctcgt
cgtgacaccatcacattcgtaatctctgatgaacagacggctccagttccttcatgctgc
tttgacagacctcctcagtttaacaggcaaacaaaacatccccaggactccttgttaatc
tatgacctcaatattactgtttatcctgtggacaaccagccaccatccattgttattggt
gaagtgcttcaggtggatgaaggaggctctacctccatcactgtagcacatattgcagcc
tctgaccaggacactcctctggaggacctgcagcttgtattggtgtctccaccacagttt
ggctatattgagaacattctgcctagtccggggtttgagaagagcaacatgggaatcagt
attgcctcttttttgtatagggatgtactgaatggacacataaactatgtgcagtcccga
caccaaaggactgaacccactgctgaccagtttatgctatacatctctgatggcgaacac
caatcctctgcaatccccttctacatcatcatcaagccaacaaatgatgaaagtccagat
ttcctagccaggaacattagtgtccgagagggagacatgaaggagttagatgcctccatt
attaatgctgtggatttggatgttcccagagatcaattaacatttcgcatcatccagcag
ccccaacatggggctatcatgggcgggcttcatggtaatgatgtggcccattatagaaga
tccatccagaatcatggaacagaggttcatgtccaagtcttcaccatggaagatctcaga
aatggtatgatgctgatgtatttgcatgatgactcagagagtgagcaggacagcttcatc
atccagctgtctgatggaaagcaccagctccagagggacatattggtcaaagtgatgccc
atcaatgatgagaagccgtgtattattagaaacactgggattgaggtggaaccaggagaa
gctagacttatttccagtgctgttctaagtgcccatgacaatgacacgccctccactaac
atcatctatgtgtttgagagtgttcccgttcatggcctgcttcagattaaggcaggcctg
gactggaggacactgacaacagaaatgaactgttcccaggaagcagtggatatgaatttg
ctgcgctatgtacacacagctcagcctggagctcacacacaagactttttcatctttcat
ctacaggatggcaggaaccgttcccctgcacaacacttccacatcactatcaaggagcta
cagaaaggagacatagcattgtttgtaaagctggtgaaagctagccgtggagagcatgta
gtgatcactacagatgtcttgctggctgtagatggcactgaaaggccagaagagctgctc
tatgtgatcactgtgcctccagtgcatggtcatatggaatacatcaaacacactggcatt
cccatacactcttttagccagctggatatagcggctaatctggtgtgctacgtccatgac
aacagacctacctcacctagagacacagtacagtttgtcatcagtaatggaaaatccaca
cgtaatggtactctggagattttggttgagatgacagacagagttctccctacgcttatg
cagaaggctggtctgcaggttcctcagggttccaccattactatcaccactgataacctg
cacctttctgacccagataccccgccccattgcctgatcttcattcttgtgcagccccca
cagtatggtcagcttattatgaaaggtttccccttagctcctgggagcaacttcacacag
cagaacctactggacctggatgttgcttacagacacttgggtggagcttctcagattgac
cggtttacattcattgctgctgatagcacggcaagaggcttcctggtgagagggaaggcg
catacagatccagtcatcttttctatacaggtgtgcagaattgaaacattagaccggttt
gctccacgcatgatggtgcttgagactctgtggaaagtggaacttctaaaagatggacgt
tatggaatctttatctcatctagagaattaaaggctcaggatatgaatgctgcagatgag
aatctcatcttccacatactcagagctccttactttggatacttggagaatgccaccaat
ggtgcgtttgtgcgtcagaggttcactcaaagggatctgaacaagaggaatattctgtat
atgattaacctttccctggaagccttaagtgacagtctggagtttgcagtctctgaccca
ctgggcaacactggaccatctcacaaattagagttcagctgggccagtgtagagctgacc
aagacagagtatcgtgtgtgtgaaggcaaaggaccactctctcttacagttcagaggaag
ggcaatatgcaggattcatcatatgtaactctcaaggtaaaggagctaacagcagctata
ggaaaggatttcatatcagctccctcaactctgattcagtttgaccctggtgtggccagt
cggcagtggaaggtagagcttgtgcaggattttctggaggaggctgaggagatgtttgag
gtgacactggattccgctgtaggtgcaatacagagaggaaacaacaaagcagtcattacg
ataatggacaacaagaatgggcagtgtgctgagaaacagtctcccaaagggccagatctt
cagggtaaggagctccaagcagggtcctaccctaaacatggctccatccaggtagagact
ttacctatcaccctgggagatgggtcagagtctgtcagaggcaataacttagctcaagtt
attacccccttctccaagaaaagactaagaaccaatggcaatggaaagtctattcgaccc
tcttcaatcattcagagtggatctgatgttctttacacttatcatggaataatgtcactg
acagtagaggatgaaactacagcctttaactctgggaaaaaggctcaagtgcaggtaacc
agtagagggcagcagcgttccctcccaggcaaaaccacaagccaccttacagcacttcct
acacctaaccgaagaggcacagcacctcagaatattttctctaggccagagcctaaggtc
tgcactccagaaatggcaggttttctccatttcaatgcaagcttaggccagctcctgcag
tgcaatgggatatcctggaaaccctgggctgctacagatgagactgtgaatgcacagaag
tgtccacaggggtggacttaccatagtcaccactgctatctgttgatcacagagcgaaaa
gctacatggaacaatgcagccaggacctgtcgagagagcttccaaggcaaccttgtcagt
gtgctatcaaaagcggacatggattggctctgggacttcagtgagaggaagcccttctgg
attggtctgaatgaccgggtgagtaaaggccagtgggaatggatggatggagagccggtt
acttacaccaactggaggcgtggtccaccccgaaccaaaatcaagagcaacaagaagtgt
gttttggtctggaggaagacaaaatggcaaatcagagattgtaagactggaaagggacac
cattttgtgtgctatgtgaaaacatga
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integrated database retrieval system
