Ictalurus furcatus (blue catfish): 128611046
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Entry
128611046 CDS
T09387
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128611046 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128611046 (polr1a)
Enzymes [BR:
ifu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128611046 (polr1a)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
128611046 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Nop14
Mso1_Sec1_bdg
Motif
Other DBs
NCBI-GeneID:
128611046
NCBI-ProteinID:
XP_053486245
LinkDB
All DBs
Position
8:complement(2061311..2077207)
Genome browser
AA seq
1696 aa
AA seq
DB search
MIFSKETPWRRLDGMSFSMYSSEEIRKLSVKGVTNPLLLDNVGNPAPNGLYDLSLGPADL
KEICTTCMQDFNNCPGHFGHVDLHLPVYNPFLFDKLYMLVRGSCLSCHMLTCTRAVIHLL
LNQLKLLDVGVMKEVCDVAIVLNQFLEGSPQASGAEIQEALEEFSAPILKANRSSHGCAP
IKHVCEMRNSLVTEFWRSHMVSRKCPNCNARKSQVRREHNSKLIVTHPSVKLDREADEDD
THVTKRGYLTPSLARDHVTKVWEKEGFFLKHLLSGLAENSPNGFSPDMFFLDLLMVPPSR
YRPISRLGDQMFTNGQTVNIQAVIKDNMIIQRLLALIAAEKARAIEGTQTELEEPTETED
PSQMDQAFLAGLTGVTLTDKLYNAWIRLQSHVNIVFDSEMDKLMTEKFPGIRQLLEKKEG
LFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLN
GPDVHPGASMVINEDGTRTILSRTNPTQREAIAKQLLTPSTGQHRMPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHRTRILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRDCFFQQDQYMELVYRGLTDKRGR
IKLLPPALIKPRKLWTGKQVVSTLLLNVIPENHIPLNLKGKAKIPSKAWVKESPRSWPGY
HPDSMCDSQVVIRNGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTMGVEDILVKPGANKQRKKIIKESVNCGIKALRAAFNLPAAAAENEGRDLWQ
NAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPALMPSGKSLPCFQPYEPQPHSGGFVTGRFLTGIKPPEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDVP
KTQFLQPRQFPFIKDNFEVIRKAQCLDEVLAKLDPQAAHSHSKAVKKWKAKHELSSPRNG
AFLLFSQKKLGKIKAQAEGQLGELINGRDNASLQVMESWKTMEESRRVKYLKKTAHCPDP
CLAMYRPDICFGSVSETFESIIESYLSQFNIRQEFHPSSEYVDSERLRHLLHLKWQRALC
EPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSNIKTPMMS
IPVRSGKKALKRVKILQKKLTRVCLAEVLHKVDVVETLRIEGKRGQKKRIFTVMFHFLPP
ELYQQDKLLQPQQILRFMEDRFFLLLLDAIKKLSAKLASINSVDTRKATGKDTDRDAEGS
TNRADDEAEGAEDGRVVDDEADEGDADAADAKRKEKQEEEVDYESEEGENSGEEDQEEVT
GQPEEDVGSEELAEARNDNSQPSVQENADGDTQDSMRVSKVLQFSPMIEAYRYDQQKDLW
CEITLVLPVSKVHFDLTSLVVAQAQNAVVMETKGITRCLLNEVTTKQGAKEQVLITEGIN
MQEMFKHGDVLDLNRLYSNEIHAMANTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLV
ADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSYKFLKQAAILGLHDKLNSPSACMVVGK
VVKGGTGLFDLKQPLQ
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgattttttctaaggagacgccatggagacggttggacggcatgtcattcagcatgtac
tcctctgaggagataaggaaattgagtgtcaaaggtgtcactaatcctctgctcctggat
aatgtcggtaacccggctcctaatggactctatgatctgtcactgggtccagctgacctt
aaagaaatctgcacgacctgcatgcaggacttcaacaactgcccgggacacttcggccat
gtcgacttgcacctacccgtctacaaccctttcttattcgataaattgtacatgctcgta
cgaggttcctgtctgtcgtgccacatgttgacgtgtaccagggctgtcattcacctgctt
ctcaaccaactcaaattgttagatgtaggagtgatgaaggaagtctgcgacgtggcgatt
gtccttaatcagtttttagaaggtagtccacaagcatcgggggcagaaatccaagaagct
ttggaggaatttagcgctcctattctcaaagccaaccgaagcagccatggctgtgcacct
atcaagcatgtttgtgagatgaggaacagcctcgtcactgaattttggagatctcacatg
gtgtctagaaaatgccccaactgcaatgctagaaagtcacaggtacgtcgagagcacaac
agcaaactaatcgtcactcatccgagtgtcaaactcgaccgtgaagcggacgaagatgac
actcacgtgactaaacgtggatacctgactccgagcttggcccgagatcacgtcaccaaa
gtgtgggaaaaagagggtttcttcctgaagcacttgctctcaggcctggcggagaacagt
ccgaacggtttcagcccggatatgttcttcttagatttgctaatggttcctccatctagg
taccggcctatcagtcggctgggagatcagatgtttaccaacggtcagacagtgaacata
caggcggtgatcaaggacaacatgatcattcagagactgctcgccttgatcgcagctgag
aaagccagggcgatagagggtactcagaccgaactggaggagcccactgagacagaagat
cccagccagatggaccaggcgtttttagccgggctaactggagtcacccttacagacaaa
ctctataacgcctggatacgcctgcagagtcacgtcaacattgtgttcgacagcgaaatg
gacaagctgatgaccgagaagttccctggaatccgccagctcttggagaagaaggagggt
ctgttcaggaagcacatgatgggaaagcgagtggactttgctgctcgctctgtcatctgt
ccagacatgtacatcggaaccaacgagatcggaatacccatggtgtttgccactaagctg
acgtacccacagccggtgacgccgtggaacgtgaaggagctgcgtcaggccgtgcttaac
gggcctgatgtgcacccaggagcctctatggtcatcaacgaggatgggacgcgcaccatt
ctcagccgtaccaaccccacccagagagaggctatcgctaagcaactgcttacacccagc
acaggccagcaccgcatgcccatgaagatcgttaatcggcacatcaaaaatggagacgtg
ctccttctgaatcgtcagccgacgctacacagaccatctatccaggctcatcgtactcgc
atcctgcctggagagaaggtgctacggctgcattacgccaattgcaaggcctacaacgct
gactttgatggcgacgagatgaacgcgcacttcccgcagagtgagctgggtcgggctgag
gcctacacgctcgtcagcacagaccagcagtacctggtgcccaaggatgggaagcccctg
gccggactaatccaggaccacatggtgtcaggcaccagcatgaccatccgtgactgcttc
ttccagcaagatcagtacatggagctggtctatagaggtctcaccgataaaagaggcaga
atcaagctgcttcctcctgctctcatcaaacctcgaaaactttggactggcaaacaggtc
gtgtcaaccctcttgttgaacgtcattcccgagaaccacatccctctgaacctgaaagga
aaggccaagattcccagtaaggcctgggtgaaggagtctcctcgatcctggccaggttac
catccagactccatgtgtgactctcaggtggtgattcgtaatggcgagctgctagtcggt
gtgctggataaagcacactacgggagctctgcgtacggcctggtgcactgctgctatgag
ctgtacggaggagagaccagtggcaagcttctaagctgcctggcccggctttttaccgcc
tacctgcagctctatcgtggctttaccatgggtgtggaagacattttggtaaaaccagga
gccaacaagcagagaaagaagatcatcaaagaatcggttaattgtggcatcaaggcactc
agggcagcctttaacctgcctgctgctgctgcagaaaacgaaggccgagacctgtggcaa
aacgcccatctgaacatagaccagcgagacttcaacatggtggacctcaaattcaaagaa
gaggtcaatcaagtcaacaacaacatcaacaaggtgtgcatgccattgggtctgcaccgt
tcatttcctgagaacaaccttcagctcatggtgcagtctggagccaaaggatccaccgtc
aatacaatgcagatctcgtgtctgctgggccagatcgagctcgagggccgtcgtcctgca
ctgatgccttctgggaaatccctgccttgtttccagccttatgagccgcaacctcattct
ggtggctttgtaaccgggaggttcctgactgggataaaacctccagagttttttttccac
tgtatggctggtcgtgaaggcctggtggacacagcggttaaaacgagtcgttccggctat
cttcaaaggtgtgtgataaagcacctcgagggtctggtggtccagtacgacctgacggtg
agggacagcgacggcagcgtggtgcagttcctctacggagaggacggcctggacgttccc
aaaactcaattcctgcagcctcgtcagttccctttcatcaaagacaacttcgaggtaatc
aggaaagcacagtgcttggatgaagtgctggcaaaactggacccacaggcggctcatagt
cactcaaaggccgttaagaagtggaaggctaagcacgagctttcgtctcccagaaacggc
gccttcctgctcttctctcagaagaaactgggcaagattaaggctcaggctgaaggccag
ctgggagagttaatcaacgggagagacaatgcttctctgcaagtgatggagagttggaaa
actatggaggaatccagacgtgtcaagtatctgaagaagaccgcccactgcccagatcca
tgcctagctatgtaccggcctgacatctgtttcggttccgtctccgagacgttcgaatcc
atcatcgagtcctacctcagtcagttcaacatccggcaggaatttcacccttcgtctgaa
tacgttgacagtgagagattaaggcacctgttgcatctgaagtggcagagagcgttgtgt
gagccgggagaggctgtaggactgctggctgctcagagtatcggtgaaccctcgactcag
atgaccctcaacacctttcactttgcgggcagaggagagatgaacgtcactctgggtatt
cccaggttgcgtgaaattctgatgattgctagttccaacatcaagacccccatgatgagc
attcctgttcgaagcggcaagaaagctttaaaacgagtgaagatcctgcagaagaagctc
acacgtgtgtgtctggcagaggtgttgcacaaggtggacgtggtggagacgcttcggata
gagggtaaaagaggccagaaaaaacgaatcttcacggtcatgttccacttccttcctccg
gagctttaccagcaggataagttgctgcagccccagcagatcctccgcttcatggaagac
agattcttcttattacttcttgacgccatcaagaaactgagtgccaagctggcctctata
aattcagtggacacacgcaaggccacaggaaaggacaccgatcgagatgcggagggctcc
actaatcgagcagatgacgaagccgagggagcagaggacggcagagtggtggacgacgag
gcggacgaaggggacgcggacgccgctgacgccaagaggaaggagaagcaagaggaggag
gtagactacgagagtgaggagggggagaacagcggggaggaagaccaagaagaggtgacc
gggcagccagaggaggacgtgggatcagaagaactagctgaggcgaggaatgacaacagt
caaccctccgtccaagagaatgcggacggagacacccaggactcgatgagagtcagtaaa
gttctgcagttcagccccatgattgaggcctacagatatgaccagcaaaaagacctgtgg
tgtgagatcaccctggtgctcccagttagcaaagtgcactttgacctgacctctctggtg
gtagcacaagctcagaacgctgtagtcatggaaacgaaaggtatcacacgttgtttactt
aacgaggtgaccaccaagcagggtgccaaggagcaggtcctgatcaccgagggcatcaac
atgcaggagatgttcaagcacggagatgttctcgacctgaatcgtttgtattccaatgag
atccatgccatggccaacacgtacggtattgaagtggctctgagggtcatcgagaaggag
attaaagacgtgtttgctgtttacggtatcgaagtggacccgcggcatctctctctagtg
gctgattacatgtgctttgaaggcgtgtacaaaccactcaaccgcttcggcattcagtcc
aacagctccccgctgcaacagatgacctttgagaccagctataagtttttgaaacaagcc
gctattttaggcttgcatgataagttgaattcaccctcagcttgcatggttgtgggaaaa
gttgtgaaaggaggaactggactctttgacctgaagcagcccttacagtga
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integrated database retrieval system
