Ictalurus furcatus (blue catfish): 128611468
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Entry
128611468 CDS
T09387
Symbol
rlim
Name
(RefSeq) E3 ubiquitin-protein ligase RLIM isoform X1
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ifu04121
]
128611468 (rlim)
Enzymes [BR:
ifu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128611468 (rlim)
Ubiquitin system [BR:
ifu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128611468 (rlim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
Prok-RING_4
zf-RING_16
zf-RING_4
SPT6_acidic
Motif
Other DBs
NCBI-GeneID:
128611468
NCBI-ProteinID:
XP_053486970
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All DBs
Position
8:complement(3467266..3474135)
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AA seq
661 aa
AA seq
DB search
MCPSVQVVLITFFLGLTAMEGSDNADQGSSEQTDSQRRQQQDRLRREEAFYQFVNNLSEE
DYRLMRDNNLLGTPGEITEEDLLNRLHQIRDGPEQPHSSSSSSSSSSSSNIPEVSRGEPR
VTEAEGTEEASNGDTLLDWLNTVRQTGNTTRSGHRGNQSWRAVSRTNPSSGDFRFSLEIN
INRSIAEQQTQTEAERLDADQSRADGSVSEPETPMEAAEVVEEPVVEEMAVIVEPELPAP
NSPAVTRPTSPQNPLPTSPSLPQVERPSRGQIRARSPSPEQRRTRARTARSHLALSLDQL
DGLPQARHGLPSRSPSEPVPDVQVDGSSRTRLHVLSRQNIQLESEETIAATEPQPAPQPH
QETETPSGEGGASARRPPTIMLDLQVRRVRPGEYRERDSIANRTRSRSQTSNNTFLYETE
RGGFRRTFSRSERAGVRTYVSTIRIPIRRISDAGLGEATSMALQSMIRQIMTGFGELSYF
MDSDSDSTDSSRGSNPAADLADALGNPDAGSPSTVTEPSPGAGGSNQSGSEAQTEEREDS
GAALRESRARQRAPISLEESGSLPFLRLAHFFLLNDDDDDQPRGLTKEQIDNLSMRNFGE
SDALKTCSVCITEYAEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVSANRESV
V
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtgtccttccgtccaggtggtgctgataacgttctttctgggtttgactgcaatggag
ggctcggataatgcagatcaaggcagtagcgaacagaccgattcgcaacgcaggcaacag
caggaccgccttcgcagagaggaggccttctaccagtttgttaacaatctgagcgaggag
gactacaggctgatgagagacaacaatcttctcggcacaccaggtgaaattactgaggaa
gacttgttgaaccgccttcatcagattagggatggccctgagcagccacacagtagtagt
agtagtagtagcagcagcagcagcagcaacattcctgaagtcagtaggggggagcccaga
gttacagaggcagagggtacagaagaagcatccaatggcgacacccttcttgactggctc
aacactgtgcgtcaaaccggcaacacaacaagaagcgggcaccggggcaaccagtcatgg
cgtgcagtgagccgaaccaatccaagtagtggagacttccgcttcagcttggagatcaat
atcaatcgcagcatcgctgagcagcagacacagactgaggcagagcgactagacgcagac
caaagccgtgctgatggctctgtatcggaacctgagacacccatggaggcggcagaggtg
gttgaagagccagtggtggaagagatggctgttatagtcgaaccagagcttcctgcacct
aatagcccagctgtaaccaggccgacaagcccacaaaatccgctcccaacttctccaagt
ctgcctcaagtagagcggccaagtcgaggccagattagagctcgtagcccaagcccggaa
cagcgcagaaccagggcgcgaacagctaggagtcatttagccctcagcctggaccagtta
gatgggcttccgcaggctcgccatggactaccttctcgaagtccttctgaacctgtccca
gacgttcaggtggacggcagctccaggacacgactacacgttctttctcggcagaatata
cagttagaaagcgaggaaactatagcagccacagagccccaaccagcacctcagccccac
caggaaaccgaaacaccttcaggggaaggaggcgcttcagcccgacgtcctccaacaata
atgctggacttgcaggttcgtagggtgcgaccgggcgagtaccgcgagagagacagcatc
gccaaccgtacccgctctcgatcacagacctccaacaacactttcttgtatgaaacagag
cgtggaggctttcgcaggaccttttcacgttctgagcgggccggtgtgaggacgtacgtc
agtactatccgtattcccatcaggaggatctccgatgctgggctcggcgaggccacttcc
atggccctgcagtccatgatccggcagatcatgactggctttggcgaactcagctacttc
atggactcggactcggactccacggactcgagccgtggctccaaccccgcggcggatcta
gccgatgctctgggaaatccagatgctggaagtccctctactgtgactgagccatcacct
ggggcaggaggctcaaatcagagtggctcagaagcacagactgaagagcgggaagatagt
ggtgcagctctaagagagagcagagcaaggcaacgagctcctatcagtctagaggagtcc
ggctctttgccctttctgcgacttgcacatttcttcttgctcaacgacgacgatgatgat
cagcccaggggcctcaccaaagagcaaatcgataacctctccatgcgcaatttcggtgag
agtgatgcactcaagacctgtagcgtctgcattacagagtatgctgaaggcaacaagctt
cgtaaacttccctgctcgcacgagtaccacgtgcattgtattgaccgttggctttcagag
aattcaacttgccccatctgtcgcagggcagtccttgtttctgccaacagagagagtgtt
gtctag
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