Ictalurus furcatus (blue catfish): 128611567
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Entry
128611567 CDS
T09387
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03008
Ribosome biogenesis in eukaryotes
ifu03013
Nucleocytoplasmic transport
ifu03015
mRNA surveillance pathway
ifu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128611567
03015 mRNA surveillance pathway
128611567
03008 Ribosome biogenesis in eukaryotes
128611567
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
128611567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128611567
03009 Ribosome biogenesis [BR:
ifu03009
]
128611567
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
128611567
mRNA cycle factors
Stress granule specific factors
128611567
Ribosome biogenesis [BR:
ifu03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
128611567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_9
UBA_8
LRR_8
UBA_4
LRR_6
Motif
Other DBs
NCBI-GeneID:
128611567
NCBI-ProteinID:
XP_053487149
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Position
8:complement(8510030..8524222)
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AA seq
656 aa
AA seq
DB search
MFSRGRKCKLAVVKHFRSEGLKEVHAVREVWIDVSFSEHDDRVGGPQFRNRKSHGPPRGR
VYNERVHQRPRGGPAGGFGPGSSGRFVDEAGDVNMNCGQDGTFQGRLNPCGRASRRGDGR
IARDRSGGVWRYRPGGGSQLLGNAERQGGISGKSKTWHKITIPYGKKYDKSWLLRSLQNL
CPIPFTPVHYSMEGQKVQFYVEDDNTASALRSLSRRITDNEGYKVVVITNPCSPPSFLRS
DLKDQDFEHLKQCMSKRFDTSEQFLDLNSIRSDQDLISQNIDVILSRRSCMEAVMKIIKE
NIPQLTALNLSNNKLYKLDDLTELVNIAPNLTTLNLSHNELKSERELDKLKSLKLTELWL
DLNPLCDHFTDQATYISAIRGRFPRLLKLDGHSLPAPIGFDVETRTAVPSCKGSYFVSAE
VQEFILRFLHQYYSLYDSGNRQPLLEAYHDEACFSLSLPSSMYNLSKSNLEEYHNHNRNI
KRIKDPVTRFRVLKHTRLNVVAFLNELPKTQHDLASFNVDVNTCTPTLLVFTVSGVFKDI
DVKSKESTRAFSRVFVAVPAVNDGLCLVNDELFVRNATTEEIRRAFATPAPTPSSSPVSS
YSPTQQEMISTFSQKSQMNLDWSQKWLQQNEWDFNRAVQLFTELKVQGSISEVAFT
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgttttcccgtggaaggaagtgcaaactcgctgtggttaaacactttcgctcagaaggt
ttgaaggaagtccatgctgtcagagaagtctggatcgatgtcagcttttcggagcatgat
gaccgagtgggtggccctcagttccgtaaccgtaaaagtcatgggccacccaggggacgc
gtgtacaacgaacgtgtacatcagagaccacgagggggtcccgcaggaggcttcggccct
ggttcctcgggcaggtttgtggatgaagctggagatgtcaacatgaactgtggccaggat
gggactttccaggggagattgaacccatgtggccgggccagccgacgaggggatggccga
attgctcgagacagaagtggaggagtctggcggtacaggccaggtggaggaagtcagtta
ttaggcaatgcagaaagacaaggaggtatctcaggaaaatccaaaacgtggcacaaaata
acgatcccttatggcaagaaatatgataagagctggcttttgaggtctctgcagaatctc
tgccccataccttttactccagtacattattccatggaggggcagaaagtgcagttctat
gtagaggatgacaacactgccagtgccctgcgcagtctgtctcgcaggatcacagataat
gaaggatataaggtcgttgtgatcactaacccctgttctccaccatccttcctccggagt
gacctgaaagaccaggactttgaacacttaaagcaatgcatgtccaagcgatttgatacc
tcagagcaatttcttgacctgaacagcattcgcagcgatcaagatttgatctctcagaac
atcgatgtgattttgagtaggaggagctgcatggaggctgtgatgaagatcattaaagag
aatatcccacaactgactgcgctaaacctaagcaataacaagctctacaagctggatgac
cttacagagctggtgaacatagctcccaatctaacgactctcaacctgtcccataatgag
ttgaagtctgagcgggagctggacaagctgaagagcttgaaactgacagagctgtggctg
gatctcaatcctctgtgtgatcactttacagaccaggcaacatacatcagtgctattcgt
ggacgattccccaggctcctcaaactggacggccacagtcttcctgcaccgataggtttt
gacgttgaaacccgcactgcagttccttcttgtaagggcagctactttgtttcagctgaa
gtccaggaattcattctgcgatttctgcaccaatactacagcttgtatgactcgggaaac
agacagcctctgctggaggcatatcatgatgaggcctgcttctccctcagccttccctct
tccatgtacaacctctccaagtctaacttggaagaatatcacaatcacaatcgcaacatt
aagagaattaaagaccctgtgacgcggttccgtgtattgaagcacactcgactgaacgta
gttgccttcctgaatgaactgcccaaaacccagcatgacttggcctctttcaatgtggat
gtcaacacatgcacaccaacattactggtgtttacagtcagtggggtgttcaaggacatt
gacgtcaagtcaaaagaatctactcgtgccttctcccgggtcttcgttgcagtaccggcc
gtgaatgacgggctatgtttagtcaatgatgaactatttgtgaggaacgctaccactgaa
gagatccgccgtgcatttgccacacccgccccgaccccgtccagcagccctgtgtcctcc
tactctcccacccagcaggagatgatctccaccttctcccagaaatctcagatgaatctc
gattggtcccaaaagtggctacaacagaatgaatgggacttcaatcgagctgttcagctc
tttacagaactcaaggttcagggctccatatcagaggtcgctttcacatag
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