Ictalurus furcatus (blue catfish): 128611581
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Entry
128611581 CDS
T09387
Symbol
cnot4a
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128611581 (cnot4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ifu03000
]
128611581 (cnot4a)
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128611581 (cnot4a)
04121 Ubiquitin system [BR:
ifu04121
]
128611581 (cnot4a)
Enzymes [BR:
ifu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
128611581 (cnot4a)
Transcription factors [BR:
ifu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
128611581 (cnot4a)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128611581 (cnot4a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128611581 (cnot4a)
Ubiquitin system [BR:
ifu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128611581 (cnot4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
zf-RING_2
zf-CCCH_2
Med7
DZR_2
RDD1
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
128611581
NCBI-ProteinID:
XP_053487175
LinkDB
All DBs
Position
8:17860546..17881794
Genome browser
AA seq
768 aa
AA seq
DB search
MSRSPELKEDPMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEEIQRIKNEKKQKQNEKKQKVTENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLYKANPNFLTSTCGGEKSKNKANATQRQNSGGKEGWPLLQGYSKLVNGLPSEHRKSP
PLLDCLTDSDHMTPEEPDAELGTDQNTGLSHFSSVLEPTSPVDKPTEPVSIGNGENIAQV
PSSDSPSPPPGFSKPSLAVPISVAELAARSPFEGAPAESQSLFSDNSNFRHPNPIPSSLP
SFPSSPQGGSDWPMTPEPQSLFTSDTIPVSSSTDWQAAFGFGSSAKQQQQEDDLGFDPFD
VTRKALADLIEKELSVQEASPRSASLLPNGQPRLPPLQHRGLYNSFSLPAHTHATSVRQP
WMGLPTRNNLAHLNHITHSHFLDPSCPPQHHSTGLGGITISAENSGSVESINVKEWQDGL
RALLPNININFGGIPNSTSSSSSSSSSSTSSMNHMGLPAGSVGLSHSLSWDGTASWMDPA
IITGIPASTGNSLDCVQDENPPHWLKSLQALTEIDGPSGSVVSQPRHTGLLDSTVRLPLH
RGGWAPYLPPPSLAPSHFHSPPPGFQTPFRPPAQTTTDLLQSAAMERH
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgtagccctgagctgaaggaagaccctatggagtgccctctgtgtatggagcct
ctggagatcgatgacgtcaacttcttcccgtgtacctgcggctaccagatctgccgtttc
tgctggcatcgcatccgcacagacgagaacggcctctgcccagcctgcagaaagccgtac
ccagaggatccggctgtgtacaagcccctctcacaggaggagatccagaggataaagaac
gagaagaagcagaagcagaacgagaagaaacagaaggtgacggagaaccggaagcacctg
gccagtgtgcgcgtggtgcagcggaaccttgtgttcgtggtgggtctctcacagaggctc
gcggaccctgaggtccttaagaggccagagtattttggaaagtttggcaaaatacataaa
gtggtcatcaataacagtacgtcgtatgcaggctcacagggtcctagtgccagtgcctat
gttacatacatccgctcagaagatgccctaagagcaatacagtgtgttaataatgtagta
gtcgatggtagaacactcaaggcttctttaggcacaacaaagtactgcagctattttctc
aaaagtatgcagtgccctaagccggactgcatgtatctgcatgaactaggagatgaggcg
gctagttttactaaagaagagatgcaggctgggaaacaccaggaatatgaacaaaaacta
ctccaagacctttacaaagcaaatccgaactttctaacttcaacatgtggaggggaaaag
tctaaaaacaaagcaaatgctacacaaagacagaacagcggtggtaaagagggttggcct
ttattacagggttacagtaaactagtgaacggtttaccttcagaacaccggaagtccccg
ccccttttagattgtttgacagactcagatcacatgaccccagaagagccagacgccgag
ttaggaacagatcaaaacacaggactctcgcacttttcctcagtcttagaacctaccagt
cctgttgataaaccaacagaacctgtaagtataggcaacggagagaatatagcacaggtc
cccagtagtgactcgccttcccctccccctgggttttctaagccaagtctggcagtgccc
atcagtgtggcagaactcgcagcacgttcaccatttgagggagcacccgccgagtctcag
tcgctcttctcagacaacagtaacttcagacatccgaaccccatccccagcagcctgccc
tcttttcccagctccccacagggtggctctgattggcccatgaccccggagccccagagc
ctctttacctcagacaccatccccgtgtcctcatccactgactggcaagcagctttcggc
ttcggctcttcggccaagcagcagcagcaggaggatgatctaggctttgatccattcgac
gtgacaaggaaagcactggctgacctcatcgagaaggagttgtcagtgcaggaagcctct
ccacgttccgcgtcactgctccctaatggccagccacgccttcccccgctgcagcaccgt
ggcctctacaactccttcagcctgcccgcacacacccacgccacctctgtacgccagccc
tggatgggcctgcccacccgcaacaaccttgcacacttaaaccacatcacacacagccac
ttcctagacccaagctgccccccacaacaccacagcacaggcctcgggggaataactata
tcagcagaaaacagcggttcagtggaaagcatcaatgtgaaagagtggcaggacggcctg
agagcgctccttccaaatatcaacatcaacttcggaggcatcccaaattccacatcatca
tcttcctcttcctcctcttcatccacctccagtatgaaccacatggggctcccggcaggc
tcagtaggactctcgcacagcctgagctgggatggcacagcaagctggatggacccagcc
atcatcactggtattccagcatccaccggcaacagtttggactgtgtgcaggacgagaac
cctccacactggctcaagtctctacaagctctgactgagatagatgggccgagcggttca
gtggtgtctcagcctcgtcatacgggcctgctggactccacagttcggcttcctctgcac
agaggcggctgggcgccgtacctccctcctccgtcgctcgctcccagccacttccactct
cctcccccaggcttccagacacccttcagacctccagcgcagacaacaacagacctccta
cagagcgccgccatggagcgccactag
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