Ictalurus furcatus (blue catfish): 128611736
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Entry
128611736 CDS
T09387
Symbol
vim
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
128611736 (vim)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128611736 (vim)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ifu04812
]
128611736 (vim)
04147 Exosome [BR:
ifu04147
]
128611736 (vim)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
128611736 (vim)
Cytoskeleton proteins [BR:
ifu04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
128611736 (vim)
Exosome [BR:
ifu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
128611736 (vim)
Exosomal proteins of other cancer cells
128611736 (vim)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
DUF1664
DUF7491
TolA_bind_tri
BLOC1_2
GAS
Trimer_CC
UPF0242
PfkB
Motif
Other DBs
NCBI-GeneID:
128611736
NCBI-ProteinID:
XP_053487460
LinkDB
All DBs
Position
1:19558948..19564728
Genome browser
AA seq
458 aa
AA seq
DB search
MANRTSATTRQSSSYTRIFGNERNASTRSSYSSRQFSVPARSSRLSYSSFSAPPSIITGK
NVRLRNVSLPRLTSDTLDFALSDAINTEFKANRTNEKAEMQQLNDRFVSYIEKVRFLEQQ
NKILSTELEQLRGKGTSRVGDLYEEEMRELRRQVEQVTSDKARVEVDRDNLAEDIERLRE
KLQEETLQREDAENNLQCFRQDVDNASLARLDLERKVESLQEEIIFLKKLHDEEIAELQT
QIHDQHVQVDMDMAKPDLTSALRDVRLQYENLATKNIHEAEEWYKSKFADLSEAAARNTE
AIRQAKQDASEYRRQVQALTCEVDALKGTNESLERQMGELEDNFAMESCSYQDTIARLEE
EIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPLPNFSSFTLRESM
METKPLVENLTKKVVIKTIETRDGHVINESTQHHEDLE
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggctaaccgaacttcagcgactacacgccagtcttcttcttatacgaggatatttggt
aatgagcgcaatgcctccacccgctccagctattcaagccgccagttctcggttccagcg
cgcagctctcggctctcctacagctccttctccgctccgccgtccatcatcacgggcaaa
aatgtgcgactgcgaaatgtgagcttgccccgactcacctccgacacgctggacttcgct
ctctccgatgccatcaacaccgagttcaaggcgaaccgcacaaacgagaaagctgagatg
cagcagctgaacgaccgcttcgtcagctacatagagaaggtgcgctttctggagcagcag
aacaagattctgagcaccgagctggagcagctccgaggcaaaggaacatcccgagtcgga
gatctttacgaggaggagatgagggagttacgccggcaagtggagcaggtcaccagtgat
aaagccagggtggaagtggaccgagataatctggcggaggatattgaacgcctcagagag
aagcttcaagaagaaactcttcaaagggaagatgctgaaaacaacctccagtgtttcagg
caggatgtcgataatgcgtccttggctcgcctagacttggagcgcaaggtcgaatcccta
caagaggagataattttcctgaagaaacttcatgatgaggagattgctgagctgcagacc
cagatacatgatcagcatgtgcaggttgatatggacatggctaagcctgatctgacctct
gcacttcgggatgtccgccttcagtatgagaatctggccaccaagaacatccatgaggct
gaggaatggtacaaatccaagtttgcagatttgtcagaggctgctgctcgcaacactgaa
gccatccgccaggccaaacaggatgccagtgaatatcgccgccaggtgcaggctttaacc
tgtgaggtggatgctcttaagggcactaatgagtctctggagcgccaaatgggagaactg
gaggacaactttgccatggagtcatgtagttaccaggacaccatcgcacgtctggaagaa
gaaatccgcaacatgaaggatgagatggctcgtcacttgcgcgagtaccaggacctgctg
aatgtcaaaatggccctggacattgagattgctacctacaggaagctgctggaaggagag
gagagcaggatcaccacgccactgcctaacttctcctcttttactctgagagaatccatg
atggaaaccaaaccacttgttgagaacctgaccaagaaagtggtgattaagaccatagag
acaagagatggtcatgtgattaatgagtccactcagcatcatgaagacctggagtga
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