Ictalurus furcatus (blue catfish): 128611811
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Entry
128611811 CDS
T09387
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6 isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128611811 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128611811 (ddx61)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128611811 (ddx61)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128611811 (ddx61)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
128611811 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
128611811 (ddx61)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
128611811 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
NA-iREase2
CMS1
Motif
Other DBs
NCBI-GeneID:
128611811
NCBI-ProteinID:
XP_053487591
LinkDB
All DBs
Position
1:19822682..19836203
Genome browser
AA seq
478 aa
AA seq
DB search
MATARTQIPTSVMGVTKQNGQARSADLQSGSHPATVFSASKKGSSIPHTSGGIRFGDDWK
KSLQLPQKDMRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSG
RDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQVSQICINMSRHMGG
VKVMATTGGTNLKDDIMRLDETVHVVIATPGRLLDLMKKGVAKADKVHMMVMDEADKLLS
QDFVILIEDIIGFLDKNRQILLYSATFPITVQKFMSKYQRKPYEINLMDELTLKGITQYY
AYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYR
NRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRYGHLGL
AINLITSDDRFNLKTIEDQLVTDIKPIPGSIDKSLYVAEFHSINHEEEEEKEDALSAP
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcaaggacgcagatccccacctcggtcatgggagtcaccaagcagaatggg
caggcaaggtcagcggacctccagtcgggatcacacccagcaacagtgttcagtgcctcc
aagaaaggaagcagtataccacacaccagtggtggcatcagatttggagatgactggaag
aagtccctgcaactcccacaaaaagatatgagagtgaaaacctcagatgtgaccgcaacc
aagggcaatgagtttgaagactattgccttaaacgtgaattgttaatgggcatcttcgaa
atgggttgggagaagccatctcctattcaggaggagagcattcctattgccctatcagga
agggacattctagcccgggccaaaaatggcacagggaagagcggagcctacctcatccct
ctcctggagaggattgacctaaaaaaggatcatattcaagccatagtaatggtgccaact
cgtgaattggctctgcaggtgagccaaatctgtatcaacatgagcaggcacatgggggga
gtgaaggtcatggccactactggtggaaccaatctaaaagatgacatcatgcgcctggat
gagacagtacatgtggtgatagccacaccaggcaggctgctggaccttatgaagaaaggt
gtggccaaagctgacaaagtccacatgatggtgatggatgaggcagacaagttgctctct
caagactttgtcatcctcattgaggatataattggatttttggacaagaatcgtcagatt
ttgctttattctgccaccttccctatcactgtacaaaaattcatgtcaaaataccaaaga
aagccctacgagataaacctgatggatgagctgactctgaagggcatcactcagtactat
gcatatgtaacggagagacagaaagtgcactgcctcaacacgcttttctccaggctccag
atcaaccagtctataatcttctgtaactcaactcagagggtggagcttttggctaagaag
atcacacagttgggctactcttgtttttacatccatgcaaaaatgatgcaggaatacaga
aatcgtgtgttccatgacttcagaaatggtctgtgtagaaacctggtttgcacagatctt
ttcacaagaggaattgacattcaggctgtcaatgtggtcatcaactttgactttcccaga
aatgcagagacctatctacaccgcattggtagatcaggcaggtatgggcacctgggtctg
gccattaatctgatcacttcagatgatcgtttcaatctgaagaccattgaggatcagcta
gtgactgacattaagccaattcccggcagcattgataagagcctatatgtggcagagttc
cactccatcaatcacgaggaagaggaagagaaggaggatgcactcagtgcaccgtaa
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