KEGG   Ictalurus furcatus (blue catfish): 128612010
Entry
128612010         CDS       T09387                                 
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b isoform X1
  KO
K16499  protocadherin delta 2
Organism
ifu  Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:ifu00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:ifu04515]
    128612010 (pcdh18b)
Cell adhesion molecules [BR:ifu04515]
 Cadherins
  Protocadherins
   128612010 (pcdh18b)
SSDB
Motif
Pfam: Cadherin Cadherin_2 PepSY IglC
Other DBs
NCBI-GeneID: 128612010
NCBI-ProteinID: XP_053487885
LinkDB
Position
8:28712982..28719765
AA seq 1179 aa
MHSNSVGITTFYWKDSKMEQMKPHTGATALILLALLHLALLATPATAVTRDPPGKTLKYK
VLEEQRVGTVIGRLREDAAAALARLPSSVSPRFRAMHAGGSAPLIAVREEDGEISVGSRI
DREALCGSHPNCTLEFDVVTLPAEHLQLFRVQVEVLDVNDHSPRFARSVVPVDISESAAV
GTRLPLDAASDPDVGDNALHAYSLERNGFFRIDVRTRTDGARYADLVVVRELDRETQSSF
QLLLSAADSGSPPRSGSTLLKINVLDSNDNSPVFEQQAYAVSLLENSPPGTLLVDLNATD
PDEGTNGKIIYSFSSHVSLKILETFKIDPENGQITLIKKVDYETTSSYELDIQAQDMGPN
SIPGHCKIIVKVVDVNDNKPKININLMTQGKEEVAYISEAAPVDTFIALVRVDDSDSGLN
GEVTCKLHGHGHFRLQKTYENNYMILTNVSLDREKRSEYSLTVIAEDRGSPSLSTIKHFT
VQVQDENDNPPRFEKSRYEIFKSENNSPGAYLTSVSATDPDLGTNGQVTYSILESTVQGS
SISTYVTIDPSNGAVYALRSFDREEVGRLAFTVQAQDGGGGASLSANATVILTVLDENDN
APIIVAPALSNHTADVPLWRQAELGHLVTVIKTTDRDAGANGEVTCSIVGGNEEGLFLME
PRRCELRTNGSVDSLVRESFDLALLVQDRGASTRLSTRAVLRVLLRDHPESHFIIPSDSG
SQATLDLSMIIIISLGAICGVLLLVMVLFATRCSRDQKDPRHSYNCRVAESTYQNHPKKP
ARQIHKGDITLVPTVNGTLPVRAHPRSPSGSPAPDSRHSHHSRQSLNSLVTISSNHVPEN
FALELAHATPPVEQVSQLLSILHQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRG
DSEAGDSDCEMGRESPLLGEGFGEVFTPDGQHRPHPAMKLCTEECRVLGHSDQCWMPPLS
SQATSDYRSNLYIPGEDPQQAPAPETAQSGESTLRKKSFSTFGKESEEEEGQEGEVEKGE
DICGTTSLLSEMNSVFQRLLPASLDAYTETNETERVPVGAGSLERRKGHLPGKANAASAY
QHGVAAWAANTHFQNPGHGHAPASHMSTSLAAPPLAAPLSMSASCSKWLPAMEEIPENHE
EDELESVLHGKRCESRSEIMDASELVAEINKLLQDVRQS
NT seq 3540 nt   +upstreamnt  +downstreamnt
atgcacagcaactctgttggaattacgactttttattggaaggattcaaagatggaacag
atgaagcctcacaccggagccacagcgctgatcctcctcgcgctcctgcatcttgcgctt
ttggcaacaccggcgacggcggtaacgcgcgatcctcccggtaagactctgaagtacaaa
gttctggaggagcagcgcgttggcacggtgatcggcaggctgcgggaggacgcggcggca
gcgctggcgcgtttgccgagctcggtgtcgccgcgctttcgcgctatgcacgcaggcgga
agcgcgccgctgatcgccgtgcgcgaggaggacggtgagatcagtgtgggctcgcggatt
gaccgagaggcgctgtgcggcagccacccgaactgcacgctggaatttgatgtggtcact
ctgcctgccgagcacctgcagctcttccgtgtccaggttgaggtgctagatgtgaatgac
cactcgcctaggtttgcccgttcagttgtgcctgtggacatttcagagagtgcagccgtc
ggaacacgcctgccattggacgccgcttcagacccggatgtgggtgacaacgcgctgcat
gcgtactcactggagcgaaatggcttcttccgcattgatgtccgcactcgtaccgatggt
gcccgctacgctgacctggttgtggtacgagagctggacagggagacccagtctagcttc
caacttctcctcagtgcagctgattcgggctcgccgccacggtctgggtccacacttctc
aaaatcaacgttctggactccaatgacaacagcccagtgtttgaacagcaggcctatgcc
gtcagccttctggaaaactctccacctggaacactactggtggatttgaacgccacagac
ccagacgaaggcaccaatggcaagatcatctactcattcagcagccatgtgtcactcaag
attcttgagacattcaagattgaccctgaaaatggacaaatcactttaatcaagaaggta
gactatgagactacctcgtcctacgagctcgatatccaggcgcaggacatggggcctaat
tcaattccgggccactgcaaaatcatcgttaaagtagtggatgtaaatgacaataagcct
aaaattaatatcaacctgatgacgcaggggaaggaggaggtggcctacatctcagaggca
gcaccagtggacaccttcatcgcattggtgcgtgttgatgacagtgactcaggtctgaat
ggagaggtgacgtgcaaactgcatggccacggccactttcggctgcagaaaacctacgag
aacaactacatgatcctgaccaatgtgtctctagaccgtgagaagcgctctgagtacagc
ctgacggtgatcgcagaagacagaggttctcctagcctctctaccatcaaacatttcacc
gtgcaagtgcaggatgagaacgacaacccacctcgctttgagaagagccgctatgagatc
ttcaagtctgagaacaactcacctggtgcatatctcacttcagtgtcagccactgatcca
gatctgggcaccaatggtcaggtgacctactcgattttggaaagcacagttcaggggagc
tccatctccacctatgtgaccatcgacccatcaaatggtgccgtgtatgcgttgaggagc
ttcgatcgagaagaggtgggccgcttggccttcacagttcaagcacaggatggtggaggt
ggggcctcactcagtgcaaatgccactgtcattctgactgttctagatgagaatgacaat
gcgccaatcattgtggcaccggcactcagcaaccacacagccgatgtgccactttggagg
caggccgaacttgggcacttggtgacggtcatcaagaccaccgatcgggatgcaggagcc
aatggagaagtgacgtgctccatcgttggtggaaatgaagagggattgttcttgatggaa
ccacgtaggtgcgagctcaggaccaatggaagtgtggattcgttggtacgggagagtttt
gacctggctttgttggttcaggaccgcggggcatctacccgtctctccactcgtgccgtt
cttcgtgtcctgttacgtgaccaccctgagagtcactttatcataccttctgattctggc
agccaggccacactcgacctctccatgatcattatcatctccctgggtgctatctgtggt
gtgctgctgctcgtcatggtcttgtttgcgacacgctgctctagagaccagaaggaccca
cgccactcatacaactgccgtgtggcagagtccacttaccagaaccaccccaagaaaccg
gccaggcagatccacaagggtgatatcacactggtacccactgtgaatgggacattgcct
gtgagggcacatccacgctcaccttcagggtctccggcacctgacagcaggcacagccac
cacagccgtcaatcactcaacagccttgtcaccatctcctccaatcatgttccagagaac
ttcgccttggagcttgctcatgctacaccacctgtggagcaagtctcacagcttctgtcc
atacttcatcagggccagtaccaacccagaccgagtttccgtggcaacaaatacactcgg
agctacaggtatgcgctgaatgagatggataagttcagtctgaaggacagtggccgcggg
gacagtgaggccggagacagcgattgtgaaatgggaagagagtctccgttgctgggagag
ggattcggtgaggtcttcactcctgatggacagcaccgaccacacccagcgatgaagctg
tgtacggaagagtgccgcgtcctgggtcactccgatcagtgctggatgcccccactgtcc
tcacaggccacatccgattatcgaagcaacctttacattcctggtgaggatcctcagcaa
gctccggcccctgaaaccgcccagtcaggagagtccaccctgaggaagaagagcttctct
actttcggtaaagagagcgaggaagaggaagggcaagagggcgaagtagagaaaggagag
gacatttgcgggaccacgtctctgctctcggagatgaacagcgttttccaaaggctcctc
cccgcatcactggatgcctacactgagaccaatgagacggagagggtgcctgtaggggcg
gggtcactcgaaaggaggaagggacacctgccaggtaaagcgaacgccgcttcggcctat
cagcatggcgtcgcagcctgggccgccaacacgcatttccagaacccaggccacggccac
gcgcccgccagtcacatgtctacctcactggcggcgccgcctcttgctgcacctctatcc
atgtcagcttcctgttcaaaatggctgccggcgatggaggagattccagaaaaccacgaa
gaggacgagctagagtcggtgctgcatggcaaacgttgcgagagccgcagcgagatcatg
gacgccagcgagcttgtcgcagagattaacaaacttctacaggatgtgcggcaaagctag

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