Ictalurus furcatus (blue catfish): 128612303
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Entry
128612303 CDS
T09387
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128612303 (scaf8)
03041 Spliceosome [BR:
ifu03041
]
128612303 (scaf8)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
128612303 (scaf8)
Spliceosome [BR:
ifu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
128612303 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
128612303
NCBI-ProteinID:
XP_053488312
LinkDB
All DBs
Position
9:3090550..3116027
Genome browser
AA seq
1272 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIISTFQNLYRCPSDDKSKIVRVLNLWQKN
SVFKSDIIQPLLDMAAGLPPPSVTPVPASTAVPVNNATPGTPATPATPANIVPSLPDWAS
QISNSDTVAAVAQILQSPQGQQLQQLVQSLQLQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAANTLNPLEQRVSSFNKKLLGQFDFGGESEPGEDSKKDTAAPQLPMVSESINNSLF
HQLAEQLQQQNLEQFQKQILEHQQHQQKSMAMENQESIFGPENSAPPAQSNVQPQLQEQE
TKLDDSIDNQQQDMDLDEGQDTVDEDTFESEEKKTSGTRSRTHSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRERKRTKSSRSYSSERRAREREKERQKKGLPPIRSKFLSVCSTTL
WVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSYKI
GSKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGMIDQETVNSEW
EAQKNTEGTPKEPQVQPAAAESSVPSTSQNETFTQPVAMMPVQIPVAQTVPAVGLVPPAF
PVTMTMPPPGFGPPPPFLRAGFNTSQPPPGFMAASSVAQSAIGAGLASAQTPLVQPTQDG
NKEQTFGAMLPPTSTIPASFMPSGMPGAVFNPVGAQAQQASADKTAVSAESLDAPNEITL
HGLQNAVRSGMGLLGMHPSASLSHPLSGQRMPGLLPIDLRPNLLQGAGARFPMLMQQGLA
QQANSLLDASSLQVRARTPFPQMEHFNRADGPFVRAPNPTAPAPDNMDKANNNNNAPTTS
DGGGQQEGDQDYRFPPPEKQSTGLLRTPPPEMRTEPTPVRTPLLERPPRGGVHMEGPGRR
EPAPGPFRAETRWGAPRGDLDERDMRGMPAGPPKSFQEDRGNPNFQNRFEMRGGGAMGGV
GPGWNRGGGGGGGGGGGGGGGGGGGGPFNANSHQDFDDRRRPWERQKDRDDRDFRREMND
NRHRERDRERGRDRNRERERDREWDNDKERDRERGGWAPPSSQPLLPLPRPSQPLLPLPT
PLLNLPPSQPESHPKPVLLHEPRQAEPQPEAKPPLQPQPDRESAGGQDHEGTFSDSVHDL
DSKPETDSEPTAEPSRPSPPAPTAKPLNDTQAPEVSASPPVAAGGGGGQTAPKEEAETGT
EPELVKTDTEET
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgttaaagcgtttaacggcgagctgtactctctgaatgaatacaagcctccg
atctccaaagcgaagatgacccagatcaccaagtcagccattaaagcgataaagttctac
aaacatgtggtccaaagcgtggagaagttcattcagaagtgcaagcctgagtacaaggtc
cccggtctgtacgtcatcgactcgatcgtgcgtcagtcgcggcaccagttcggccaggag
aaggacgtgttcgctccacgcttcagcaagaacatcatcagcactttccagaacctctac
agatgcccctctgatgataagagcaagatcgtccgtgtcctcaacctgtggcagaaaaac
agcgtgttcaaaagtgacatcatccagccgttactggacatggcagcgggactcccgccc
ccgagcgtcacacccgttcccgccagcaccgcggttcctgttaacaatgccactcctggc
actcctgctactccggccactccggccaacatcgtgcccagtttaccggactgggcctct
cagatctccaactcggacaccgtggcagccgtagcgcagatcctacagagccctcaagga
cagcagttgcagcagttggtgcagagtttgcagttgcagcagcagaagcctcagccgtct
ctcctgcaggcgttagacgcaggtctggtggtccaactgcaggccctgaccgctcagctc
acagcggccgcagcagccaacacgctcaacccgctcgagcagagagtctcctccttcaac
aagaagctcttgggacagttcgacttcggtggcgagtccgaacccggcgaagattccaaa
aaggacacggcggcacctcagttgcccatggtttcagagtccattaacaactccctcttc
catcagttggctgagcagctccagcagcagaacctcgaacagtttcagaaacaaattcta
gagcaccaacagcatcagcagaagtccatggccatggagaaccaggagagcatcttcggt
ccggagaactcggcccctccagcacagagcaacgtccaaccgcagctccaagagcaggaa
accaaactggatgattctattgacaaccaacaacaggacatggacctggacgagggacag
gacactgtagacgaggatacgttcgagtcggaggagaagaaaaccagcggtactcgttcc
agaacgcactctcggtctcgctccaggtccccaaagaggaggaggtcaaggtcacgctca
gggtcccggaagcgcaaacaccggaaacggtcgcgctcgcgctccagagaacggaagaga
acgaaatcctctcgttcctactccagcgagcgacgagcacgggagagagagaaggagcgg
cagaagaaaggccttcctccaatccgctccaaatttctcagcgtctgtagcactacgttg
tgggtgggccaagtggacaagaaggccacacagcaagacctcaccaacctttttgaggag
tttggccagatcgaatccatcaacatgattcctcccagaggatgtgcttacatctgcatg
gtgcatcgtcaggacgcttatcgcgcaagacagaaattaagcaccggctcgtataaaatc
gggtccaaggttataaagattgcctgggcccttaataagggtgtgaaacaggagtacaaa
cagttctgggacgtggatctaggagtgacctacatcccctgggagaaggtcaaggtggac
gacctggacggctttgcggaaggaggcatgatcgaccaggaaacagtcaacagtgaatgg
gaagctcagaagaacacagaaggaacacctaaggaaccccaggttcagccggcggctgcc
gagagcagcgtgccgagcacgtcacagaacgaaaccttcacgcagccggtcgcgatgatg
cccgtacagatcccagtggcgcagaccgtccctgctgtcggcctggtcccgcccgcattt
ccggtcaccatgacgatgcccccaccaggtttcggtcccccgcccccatttctcagggct
ggattcaacacctcgcagcctcctccaggtttcatggccgcttccagtgtcgctcagtct
gccatcggagctggtctcgcctccgcccaaacacctttggtacaaccgactcaagatggc
aacaaggagcagacgtttggagcgatgctccctccgacgagcactattccggcaagcttc
atgccctcgggaatgcctggagcggtgttcaaccctgtgggagcgcaagcacagcaggcc
agcgctgacaaaacagctgtgtctgcagagagcttagacgcacctaacgaaataacacta
cacggacttcagaacgcagtacgcagtgggatgggtttactgggcatgcacccttccgca
tctctctctcaccctctctctggacagaggatgcctgggctgctgcccattgacttgcgt
cccaacctcctccagggagccggggctcgtttccccatgctcatgcagcaaggcctggcg
caacaagccaacagcctcctggacgcctcctcgcttcaggtccgtgcccgcacccctttc
cctcagatggagcactttaatcgtgcagacggtcccttcgtgagggcccccaatcccaca
gctcctgcaccagacaacatggacaaagctaataataacaataacgcaccgactacttca
gatggcggaggtcaacaagagggcgatcaggactatcgcttcccgcctccggagaaacag
agcacgggcctgctgaggacccctcctcctgaaatgaggacggagccaacccctgtcaga
actccactgctggagagacctcccagaggaggcgtgcacatggagggacccgggagacgg
gagcccgcgccaggccctttcagagctgagacgcgctggggcgcaccgcgcggggacttg
gacgagcgagatatgagaggaatgccagcaggaccacccaagagctttcaggaggatcgc
gggaatccgaatttccaaaaccgtttcgagatgcgaggcggaggagccatgggtggagta
gggccgggctggaatcgaggaggaggaggaggaggtggtggtggtggtggtggtggtggt
ggtggaggaggaggaggtcctttcaatgccaactcgcatcaggactttgacgatcgtcgt
cggccttgggagaggcagaaggaccgcgacgacagggacttccgcagggaaatgaatgac
aaccggcacagggagcgagaccgcgaacgagggcgagatcggaatcgggagcgagagaga
gacagagaatgggataacgataaggaaagagacagggagcgcggcggctgggcgcctcct
tcttcgcaacctctcctccctcttcccagaccatcccaaccactgctccctctacccaca
cctctgctaaacctgcctccgtctcagcccgagtcgcatcctaaacccgtcctactgcac
gagccgagacaagccgaaccacagccggaagcgaagccgcccctgcagccgcagcctgac
agagagagtgcaggcggccaggaccacgaaggcacctttagtgacagtgttcacgacctg
gactctaaacccgaaaccgactcggaacccacagccgagccgtctcgcccctccccgccc
gctcccacagccaagcccctaaacgatacgcaagccccggaagtttccgcttccccgccc
gtggctgcaggcggcggcggcggacagaccgcgccgaaggaagaagccgagactgggact
gagcctgagctagtgaaaacggacactgaggaaacataa
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