Ictalurus furcatus (blue catfish): 128612572
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Entry
128612572 CDS
T09387
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128612572 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ifu03000
]
128612572 (arid1aa)
03021 Transcription machinery [BR:
ifu03021
]
128612572 (arid1aa)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128612572 (arid1aa)
Transcription factors [BR:
ifu03000
]
Eukaryotic type
Helix-turn-helix
ARID
128612572 (arid1aa)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128612572 (arid1aa)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128612572 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
TEX19
Motif
Other DBs
NCBI-GeneID:
128612572
NCBI-ProteinID:
XP_053488849
LinkDB
All DBs
Position
1:complement(22794970..22822246)
Genome browser
AA seq
2259 aa
AA seq
DB search
MAAQVASATSLNSSPPSELKKADRDPKEESVPAEKQQENKDPGSEIGSPGRGELHERPEP
GNATGGGGGGGGGESEMKNGNGNPPRLTNNQNDSAGPEANNHPGMAHQHHGSGFPPPSYG
YTHHYARGPFHQHGGQQSPGMAAAAPSNMMEPYGPNSHDHGFPNHQFNSYGQFPNRAPYP
SPGYAMNSPRSAPAQAAKQQQPAGGSPTMAASYNNQRYNIANPQATSTPTLNQLLTSPSS
SRGYSNYPPSDYNNQEGANKGAADISAAAQYGGGHPGWQQRSHHPPPMSPGSTGQTLGRN
QTPGSMDQMGKMRGQPYGAGSPYTQQPHQGPPGGQQGPAYPGQGYGPPGPQRYPMAMQGR
MQYGQQMAYGQQGPGGYGQQGQQPYYSQQGPGTHPGQQQSPYPHPTQPSAPHGQGGHPYP
QSHMPQQSQGPLGVPPPGPSQSQTPYSQPPTPQSTQSPYPQQQTPQSQPPPQGASQAPPA
SQAQSNYTHSQGAQQPPSQQTPQAPTPASQQPTVQGQPSSYSQNPSQQQQQQSSYQRFPP
PPQEISQESFSSQSSATASSQPVASTKSSSEDMQGRPSSLPDLSGSIDDLPTGTEGALSP
GVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASATASRSGPLSPAAM
PGNQMPPRPPSGQSDGILHPGMNQPGMGQDRGFMQRNQMPPYGSPQSGSALSPRQSSGGQ
MHGGMGPFQQNNSMGSYGPQGGQYGPQGYQRQPGYGGIPNANYPGPGMGGSMNPMSGQGG
GPPFTGMPPSRMPHAQMGGRPYGPNMGPNMGPNMGPNMGNIPPQVGSAMCPPPGLNRKPQ
EAAAAMQHGSTNSIHNRMPGYPSMSPGMMGSGPPYGPSMNNMPGMMNTQGPPFPMGGNMP
NNSSGMSPGPEFGMDGKLNQPQKMNNKAEGTPKSDSKSKKSSSSTTTNEKITRLYELGSE
PERKIWVDRYLAFIEEKAMGMSNLPAVGRKPLDLFRLYMSVKEIGGLTQVNKNKKWRELA
TSLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIMSAEGKKNQAKVQPPSPAGS
GSLQGPQTPQSTSSSMAESGDLKPPTPASTPHSQMPSMQSGRSSVNLQDPFADGSDPAFS
RRNTMTPNSGYQSGMSTPEMPGRMGPYEPNKDPFSGMRKVGEPFMAGAQGPNSNLGEQFN
RGSGGPVGNMPMGQRQQYPYGTGYERRPESGMGPENNMGPGVPQPNMMPSNTDTGMYSPN
RYPSQQQRLDSYGNQFPGQGAPPGGSYPNQQPGMFPQQQTNYKRPGEGGYPPAKRHHDGE
MYGGPFGAQQPQQQPQAPPNAPSAAQPEMYNQFGSSYPGPERRPPGPQNQFPFPFGRDRM
QPGSGPNSQASMPPQMMGSSMQSGPDGPQAGMWQGRNELGYPNYPNRQGPLGGPAQGPGY
HGMNRSEEMMSSEQRINHEGQWPGPRQPAYGPAGAGPPMSRPLQSNYQSPQAMQNHIPQV
SSPTPMPRPMESRTSPSKSPYMPSNIKMQKAGPPVPASHIIPSPVQPPMMRRDPPFPPGS
VEATQPVLKPRRRLTMKEIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSISNFN
LVQLPGFLELIVEYFRRCLIEIFGILREYEVGDPGQRTLLDPNALKEGENGEDEEEPVVM
GMEEDGETEEEGEGEENSSQQRVERASAVQPQIKTEKKAGDSMKDEDGKVMENILPTELK
STEAPPLDLCVTQERPKQASKFDKLPLKVVKKKDPFVVDCSSKLGRLQEFDSGLVHWSIG
GGDTTEHIQTHFESKTDLLQSGNRTKPTQTCRRKKASEKIECEAPVVPSCSVERRKEEEQ
TQPQQSSTRQLTDGVSEEKEEKPVNVPESSMEPVSQKEEEEPEGSNQETSKLALLNISTS
SQSQHSVTVLEDEPHSKDEAPLITLSDWQDSLARRCVCVSNIVRSLSFVPGNDLEMSKHP
GLLLLLGRLVLLHHRHPERKQAPLTYEKEEEADKDIGEKDEWWWDCLELLRENCLVTLAN
ISGQLDFSIYSESICLPLLDGLLHWAVCPSAEAQDPFPTLGLNAALSPQRLVLETLSKLS
IQDNNVDLILATPPFSRLEKLFGNLVRLVGDRKVPVCREMAVVLLANLAQGDSLAARAIA
VQKSSIGNLLGFLEDSLAATQFQQSQGSLLHMQGAHFEPTSVDMMRRAARALHALAKVEE
NHSEFTLYESRLLDLSVSPLMNSSVSHVICDVLFLIGQS
NT seq
6780 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgctacctctctcaacagcagcccgccttccgagctgaaa
aaagcggaccgagacccaaaggaggagtcggtaccggccgagaagcagcaggaaaataag
gatccgggatcagagatcggatcaccgggccgcggcgagctgcacgagcggcccgagcct
ggcaatgctacgggaggaggaggaggaggaggaggaggggagtccgagatgaagaacggc
aacggcaatcctccgcggctcaccaataatcaaaatgattctgccggacccgaagcgaat
aaccacccgggcatggcccatcagcaccacgggtccggttttccgccgccgtcctacggc
tacactcaccactacgcacggggcccttttcatcaacatggcggacaacaaagccctggc
atggcagccgcggcgcccagcaacatgatggagccgtatggaccgaattcgcacgaccac
ggcttcccaaaccatcagttcaacagctacggacaatttccgaaccgagcgccgtacccg
agcccgggctacgccatgaactctccgcgcagcgctccggctcaggcggctaagcagcag
cagccagcgggaggatctccgactatggccgcgtcctacaataatcagcgctataatatt
gcaaatccacaggccacgtccacaccgactctaaaccaactcctaacctcgccgagctcc
agccgcggatacagcaattacccgccgagcgactacaacaaccaggaaggcgctaacaag
ggagccgcggatatcagtgctgctgcccagtatggagggggccatccgggctggcaacaa
aggagccatcacccgccacccatgagcccgggaagtacgggtcaaaccctcggtagaaac
cagactccgggctcgatggatcagatggggaagatgcgaggccagccatatggagcggga
agcccatatactcagcagccccaccaaggacctccagggggccagcagggtcctgcatat
ccaggccagggttatgggccgcctggtcctcagagatacccaatggccatgcagggtcgc
atgcagtatggccaacagatggcatacggacagcagggaccaggtggttatgggcagcag
gggcagcagccttattacagtcagcagggcccaggcactcacccgggtcagcaacagtca
ccgtaccctcaccctacccagccatctgcacctcacggacagggtggccatccctacccg
cagtctcacatgcctcagcagtcccaggggccattgggcgtgcccccacctgggccatct
caatcacaaactccctactctcagccccctacaccacagtccactcagtccccatatcct
cagcaacagacaccccagtcccagcctcctccgcagggagcctctcaagctcctccagca
tcacaggcgcagtccaactatactcacagccaaggagcccaacaaccaccatcacaacag
accccgcaagcacctacgccagcctcccagcagcccacagtgcaggggcagccttcctca
tattcccagaatccttcgcagcagcagcagcagcagtcttcttatcagcgttttcctccc
cctcctcaggagatttcccaggaatcctttagctcacagtccagtgctactgcctccagt
cagcctgtggcctccactaagagctcctccgaggacatgcagggacgaccctccagtcta
cctgatctgtcaggctctattgatgacctgcccactggtacagagggagcgctcagtcct
ggtgttagtacatctggagtgtctagcagtcagggcgaacagagcaacccagcacagtct
ccgttttcccctcacacttcccctcatctcccgggcatccgtggaccttcaccctcccct
gtcggctcacctgctagtgccacagcatcccgctctggacccctctctccagcagcaatg
ccaggaaaccagatgcctccccggccccctagtggtcagtctgatggtattttgcaccct
ggtatgaatcagcctggcatgggccaagatagaggattcatgcaaaggaaccaaatgcca
ccttatggctctcctcagtctggctctgcattgtcacctcggcaatcgtctggaggtcag
atgcatggtggaatgggaccttttcagcagaataactcaatgggcagctatgggcctcag
ggtggccaatatggcccacaaggttaccaaaggcaaccaggttatggtggcatacccaat
gccaactacccaggccctggcatgggaggatctatgaatcctatgtctggacagggggga
ggcccaccttttactggaatgccaccaagtaggatgccacatgcacagatgggtggacga
ccatatggtcctaatatggggcccaacatgggtcctaacatgggccccaatatgggcaat
ataccaccacaggttggttctgcaatgtgccctccaccaggcctcaacaggaagccacaa
gaagcagcagctgccatgcagcatggatctaccaattccatacacaacaggatgcctggt
tatcccagcatgtctcctggtatgatgggctcaggacctccatatgggccctccatgaac
aatatgccaggaatgatgaacacccagggaccacccttccccatgggtggaaatatgcca
aacaacagcagtggtatgtcccctggtccagaatttggtatggatgggaaactcaaccag
ccacaaaagatgaataacaaggctgaagggacacccaagtcagactccaaatccaagaag
tcaagctcctccaccacaaccaatgagaagatcactcgtctgtatgagcttggttctgag
ccagaacggaagatttgggtggaccgttacttagcgttcattgaggagaaggcaatgggc
atgagcaacctgcctgccgtaggccgcaagcccctcgatctcttccgcctttacatgtct
gttaaggaaattggaggtctcacacaggtcaacaagaataaaaagtggcgagaacttgcc
accagtctgaatgttggcacatccagcagtgcagctagctcactaaagaagcagtacatc
cagtgtctgtatgcttttgaatgcaagattgagcgtggagaagatccaccacctgacatc
atgtctgcagagggcaagaagaaccaggctaaggtccagccaccctccccagctggatct
ggttccctgcagggacctcagaccccccagtccacaagcagttctatggctgagagtggg
gatttgaagcctcctacacctgcttctaccccacatagccagatgccctcaatgcaaagt
ggcaggagcagtgtgaaccttcaggatccatttgctgatggcagtgacccagcattctct
aggagaaacaccatgactcccaactcaggctaccagtctggcatgagcactccggagatg
cctggccgcatgggcccttatgagcccaacaaggacccatttagtggcatgcgtaaagtt
ggggagcctttcatggctggtgcacagggtcctaacagcaaccttggagagcagtttaac
cgtggatcaggaggtccagttgggaatatgcccatgggacagaggcagcagtatccatat
ggaacaggctatgagagaaggccagaatcagggatgggcccagaaaataatatgggacct
ggagtaccacagccaaacatgatgccttccaacactgacactgggatgtactcgccgaat
cgctacccatcgcagcaacagcggctcgattcctatggtaatcagtttcctggccagggt
gcgcctcctggtggctcgtacccaaatcagcaaccaggaatgtttccacagcaacagact
aactacaagagaccaggggagggaggctaccctccagcaaagcgccatcacgatggtgaa
atgtatggcgggccatttggtgctcagcagccacagcagcagcctcaggctcctcctaat
gctccttcagcggctcagccagaaatgtacaaccagttcggcagctcttaccctggacca
gagcggcggcctcctggaccacaaaaccagttccctttcccttttggaagggatcgcatg
cagcctggctcaggccccaactctcaagcgtccatgccacctcagatgatgggcagctcc
atgcagtcaggtcctgatggcccccaggctggtatgtggcagggcagaaatgagttgggc
taccccaactatccaaacagacaaggaccccttggtggacctgcgcagggcccaggatat
cacggcatgaaccgatctgaagagatgatgtcatctgagcagcgtataaaccatgaagga
cagtggccagggccaaggcagcctgcgtacggcccagcgggggctgggccacccatgagc
cgccccctgcagtccaactaccagtctccacaagccatgcagaaccacattccacaggtg
tccagccccactcccatgccccggccgatggagagcaggacatccccaagtaaatctccc
tacatgcccagcaacatcaagatgcagaaggcaggtccacctgtgcccgcgtcccatatc
atcccttcacctgtacagcctccaatgatgaggagagatcctccgttccctccagggtct
gtagaggccacacagcctgttctcaagccacgcaggcgactcaccatgaaagagattggc
acaccagaggcatggagggtgatgatgtctctaaaatcgggtctgttagctgagagcaca
tgggctttagacaccattaacatcctgctgtatgatgacaacagtatctccaattttaac
ctcgttcagctccctggtttcctggaactaatagtggagtattttagacgttgcctcatt
gagatctttggcattctgagggaatatgaagttggtgatccaggacagagaaccctgcta
gaccccaatgctctcaaagaaggagagaatggggaggatgaagaggagccagttgtaatg
ggtatggaggaagatggtgaaaccgaggaggagggtgaaggggaagaaaactcatcacag
cagcgtgtggaacgtgcctcagcagtgcagcctcagataaagacggagaagaaggcgggt
gactcaatgaaagatgaagatggcaaagtgatggaaaacattctgcctacagagctaaaa
tcaacagaagcaccccctctagatctttgtgtgactcaggagaggccaaaacaggccagc
aagtttgacaaacttcccttgaaagtggtgaaaaagaaggatccatttgtggtagactgc
tccagcaagctcggacggcttcaggagttcgacagtggtctggtgcactggagtattggt
ggaggtgacactacagagcatattcagacccattttgagagcaagacagatttattgcag
tcagggaataggacaaagcctacccaaacgtgtagaaggaaaaaagcatcagagaagatt
gagtgtgaggcacccgtagtaccctcatgtagtgtggagcgaaggaaagaagaggagcag
acacaaccacagcaatcttctaccagacagttaaccgatggtgtttcagaagaaaaggag
gagaaacctgtcaatgtccctgagtcttcaatggaaccagtatcgcagaaagaggaagag
gaaccagaaggatcaaaccaggagaccagcaagctggctctcctcaacatcagtacttcc
tcacagagtcagcattctgtcactgttctagaggatgaacctcacagcaaggacgaagcc
ccactaatcacgctttcagactggcaggactcgcttgcccgccgctgtgtctgcgtctcc
aacatagtccgcagtctttcgtttgtccctggcaatgacttggagatgtccaagcatcca
gggctgcttctgctgttgggccgccttgttctccttcatcatcgtcatcctgagcgtaaa
caggcccctttaacgtatgagaaggaggaagaggcagacaaggacattggcgagaaggac
gaatggtggtgggactgtttggagctgctgcgagagaactgcctggtcacgctggctaac
atttcaggtcagcttgacttttctatctactccgagagcatctgcttgcctctgcttgat
ggcttgctccactgggctgtgtgtccttctgcagaagcccaggatcccttccctactttg
gggcttaatgcagctttatctcctcagagactggtcctggaaactctcagcaaactcagt
atccaagacaataacgtggatcttattctggcaacacctccgttcagtcgactagagaag
ctttttgggaaccttgtacgtctggttggggaccgaaaggttcctgtatgccgggagatg
gcagttgtgcttttggccaaccttgcccagggtgacagccttgcagcccgtgccattgcg
gtacaaaaaagcagtatagggaaccttttgggcttccttgaggacagtttagcagccaca
cagttccaacagagccaagggtccctgctgcacatgcagggggcgcactttgaacctaca
agtgtggacatgatgcgtcgggctgctcgggctctacatgcccttgctaaggtggaggag
aaccactcggagtttacactctatgagtcgcggctactggacctctcggtctcccctctt
atgaactcttcagtgtcccatgtcatctgtgatgtactgtttctgattggccagtcatga
DBGET
integrated database retrieval system
