Ictalurus furcatus (blue catfish): 128612640
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Entry
128612640 CDS
T09387
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03013
Nucleocytoplasmic transport
ifu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128612640 (srrm1)
03015 mRNA surveillance pathway
128612640 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128612640 (srrm1)
03041 Spliceosome [BR:
ifu03041
]
128612640 (srrm1)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
128612640 (srrm1)
Spliceosome [BR:
ifu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
128612640 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
128612640
NCBI-ProteinID:
XP_053488932
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All DBs
Position
9:29309307..29323320
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AA seq
807 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVVEFVFNQLEEKNPDAKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKLRQESLAVLKKVDEDKKDRESKEKAQNRSPKRPFLRSFFDSRRKSRSP
AKRERKRSHSRSPRRNPSPPALPLPSPPSQKPEPQPEPDQSESSKPEPLVLEASSTSDLA
NDAKPDSVSEVPKDASPEKPAKAEDKPKPRDPKERDREKDGRRDRPRHRTRSRSPRPRRR
HRSRSRTYSPRRKPSPRRRVSPRRRSPPRRPPPSRHRRSRSPARRRRSRSRSSSGSSSSR
SPHKRPAKRSSVTPPRKQPRRTDTSSSPSGRRRSPSGSNRRPAGRNESPSPAPKPRRSDL
SESEEDKLGKGAPVDSVQQRRQYRRQNQQSSSETGSSSSSSEDEGPRRPGRGPPARNGDI
RRRRSHSPMSPRRRHRDASPRKRRSPSPRRHRSPSPRRRRSPSPPPRRRSPSPPPRRYSP
PIQRRYSPSPLPTHKRRPSPSPAPPKRSSPRSSSSPPPRSRRSPPMSSSGRQGSPQSRYP
PAGSSPQRRGQSPAHGRAIRRVSRTPEPRKTQRGSQSPRPMRRQSSRSRSASPDRFPASS
AAASGSLKRPAPASASPSPSPARSASGSPAPPPPPPPPAKKASSASPSPSPNKNSDVDVG
KKKKKKKEKKHKKDKKHKKHKKHKKEKSAAAAPGDGQENARVEEEHESDQKKESESEVDD
SLDDLEKHLREKALRSMRKAQISPPQS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcaccagcgcggagcaggacaaccgattcagtaacaag
cataagaagttgctgaagcagctgaagtttgcagaatgtctggagaaaaaggtggacatg
accaaagtaaacctggaggtcatcaagccgtggatcacgcagcgcgtcacggagatcctc
ggcttcgaggacgacgtcgtcgtcgagttcgtcttcaaccagctggaggagaagaatccg
gacgctaagatgatgcagattaacttgaccggtttcctgaacgggaagaacgcacgtgag
ttcatgaaggacctctggcccctgctgctgagcgcccaggagaacatcgccgggatcccg
tccgcctttctcgagcagaagaaagaggagatcaagctcagacaggagtctctggcagtt
ctgaaaaaggtagacgaagataagaaagacagagagagcaaagagaaagctcagaacagg
agtcccaagcgacctttcctcagatctttttttgactccaggagaaaatctcgttcaccg
gcaaagcgcgaaaggaaacgcagccactctcgctcgcctcgacgcaatcccagcccacca
gctctgcccctgcccagtccacccagccaaaaacccgagccccagccagagcccgaccaa
tcagagagctccaaaccagaaccgctggtcctggaggcttcctctaccagtgatttggcg
aacgacgcaaaaccggattcggtgtctgaggttcccaaggacgcgtctccggagaaaccc
gcaaaggcagaggacaaaccgaagccgagagatccgaaagaacgggaccgggagaaagat
ggacggcgagatcgtccacgccatcgaacgcggtctcgctcgccccgcccccggcgacgc
caccggtcacgctctcggacgtactcgccccggcgcaaaccaagtccaaggagacgcgtc
tccccccgacgcaggagtcctccgagacggccacctccttccagacacaggcgcagccgc
tcacctgcccgcaggcggcgttcacgttctcgctcgtcttcaggcagctcgtcctcgcgc
tcgcctcataagaggcccgctaaacgcagctccgtcacgccgcccaggaaacaaccacgc
cgcactgacacgtcctccagccccagcgggaggcgccgcagcccctcaggttcaaatcgg
cgacccgctggaagaaacgagtcgccgtctcctgctcctaaacccagacgatcagaccta
tcagaatcagaggaggataagttggggaaaggggcaccggtcgattcggtccagcagcga
cggcagtatcgcagacagaatcagcagtcctcttcagagaccggatcatcctcctcatcc
tcagaggatgaagggccgaggaggccaggcagagggccaccagcaaggaacggcgacatc
aggaggaggcggagtcactcacccatgtcacctaggagacggcacagggatgcgtcaccg
agaaagagacgttctccgtctcctcgacgtcaccgctcgccttcacccagacgccgtcgc
tcaccgtcacctccacccagacgcaggtcgccctcgccccctcctcgccgctattccccg
cccatccagcgtcgctacagcccctcgcctcttcccactcacaagagacgcccttctcct
tcgcccgctcctccgaagcgcagcagtcctcgctcatcttcctccccccctccacgctca
cgccgcagcccacccatgtcctcctcaggacgccagggcagccctcagagcagatacccg
cctgcggggtcgtctccgcagcggcgcggacagtctcccgctcacggcagagccatccgc
agggtgtcgcgtacacctgagccacgtaagacacagagagggtctcagagtccacggcca
atgagaagacagtcctctcgttcgcgctctgcctctcccgatcgtttcccagcatcctcg
gcggcagcttccgggtctctcaagcggccggctccggcgtctgcgtccccgtctccttct
cccgcccgctcggccagcggctctcctgctcctccccctcctcctccacccccggccaag
aaggccagcagcgcctcgccaagcccctcgcccaacaagaactctgatgttgatgtcggc
aagaaaaagaagaaaaagaaggagaagaaacacaagaaggacaagaagcacaagaagcac
aagaaacacaagaaggagaagagcgccgccgcagcgccgggggacggacaggaaaacgct
cgggtggaggaagagcacgaatccgatcagaaaaaggaatcagagagtgaagtagacgac
agtctggatgatctggagaagcacctgagggaaaaagcactgcgctccatgaggaaagcc
cagatttccccgccccagtcctga
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