Ictalurus furcatus (blue catfish): 128613344
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Entry
128613344 CDS
T09387
Symbol
rc3h1a
Name
(RefSeq) roquin-1a isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ifu03000
]
128613344 (rc3h1a)
04121 Ubiquitin system [BR:
ifu04121
]
128613344 (rc3h1a)
Transcription factors [BR:
ifu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
128613344 (rc3h1a)
Ubiquitin system [BR:
ifu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
128613344 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_3
Prok-RING_4
zf-CCCH
zf-CCCH_4
zf-C3HC4_2
zf_CCCH_4
Baculo_IE-1
FYVE
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
128613344
NCBI-ProteinID:
XP_053489991
LinkDB
All DBs
Position
10:17685815..17718559
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AA seq
1102 aa
AA seq
DB search
MPVQAPQWTEFLSCPICTQTFEENVRKPISLGCGHTVCKMCLNKLHRKACPFDQTTISTD
IELLPVNTALLQLVCPQVPKSQPVTLVKGAEDIKHYDEARTCVEELALYLKPLSNTRGVG
LGTASQSLLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSPLSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ADIDPSPDAPAPTWEQLDKGLVAVKTVVHGLVDFIQNHSKKAGDPQQAPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKFRKMNKRLPLRKPLSQSLTQLNDMDMGCNPGLLPD
DGLDLAHLTHKPAMVTNGILSVPPGSELTHLVSRGSAAPYDTARKLGKLDTGSLSAPESP
PDSLDSIPKVMSSTSHPRVPREGLTAHTLSAVSRVPQMPQYPPHQPEAYYSESRVPPSGS
QYDSSQYPSGNSYAYQHLQPRYTRQPVDPGLAPYPDPYPVSYAPERQYPAPPSDPRYSYP
PHHDSRRHAPYGGHPPLTSYARDELGHRSPVPMEMTPPPQAPTAGASSSYLPESRDRYGP
ESYNHSGHSRPYSGRSAYARPQPSLDYLHRRRKEIMAQLEERKVVSPPPFASSPNLAHSY
DPSYTQEARGQNHYMGENPPPCQNVRQPEYAASYSPWSCDTFVPYIGTKDMKSKDCSATG
YMEMQAIEKSRRDPALELQRRVAEVKDDDPIIPFGSLPTVSRFGAISRTSKSGYQPAGLV
PGPPAKHSANAVDYSYGNHGGWSEPSYTQHQTMPSQGHFSERLPPAAQDREQLKMELHQV
NQQITQQTRCMEREPVSAAGQAAPVEWSTASVSSEQLSLELHQVEREIGMRTREMAREAA
SMKYKLVAGSENGQSEHNIQREDHHLALNEGSNGSSSVVQDCGLGSSSMSSLTSKTSSLS
LSSELVGSSPDLTKNGVAHACS
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagcgccgcaatggaccgagtttctgtcctgtcccatctgcacgcagacg
ttcgaggagaacgtgcgcaaacccatcagcctgggctgcggtcacactgtctgcaagatg
tgcctgaacaagctgcaccgcaaagcctgccctttcgaccagaccaccatcagcacagac
attgagctgctgcccgtcaacaccgcgctgctgcagctcgtctgccctcaggtacccaag
tctcagcccgtcactttagtgaaaggagcagaggacatcaagcattatgatgaagcacgc
acgtgtgtggaggagctggctctctacctcaaacccctcagcaacacccgaggtgtaggg
ctgggtactgcgagtcagagtctcctcagcagacccatgcagaggaagctggtgaccctg
gtgcactgccagctggtggaggaggagggtcgtatccgggccatgcgtgcagcccgatct
ctgggtgaacgcacagtcaccgagctcatcctgcaacaccaaaacccccagcagctctcg
tccaacctgtgggccgctgtacgagcacgaggctgccagttccttggccctgccatgcag
gaggaggctctaaagttggtgctgctggcattggaggacggttcgcctctgtcccgcaag
gttctggttctgtttgtggtccagaggctggagccacgcttccctcaagcctctaaaacc
agtataggacatgtcgtacagctgctgtacagagcctcttgttttaaggtgaccaagcga
gacgaggactcatccctgatgcagctaaaggaagagttcaggacgtatgaggctctgcgg
agagagcatgactcccagattgtccagatcgccatggagggaggcctgcgtattgcccct
gaccagtggtcctccctactctatggggatcagtcccacaagtcccacatgcagtcaatc
attgataagttgcagaccccagcgtcttttgctcagagtgtacaggagctcactattgcc
ctgcagagaacaggagacccggccaacctcaaccgccttagaccgcatttagagctgctg
gctgacatcgacccgagcccagatgcccctgcccctacatgggagcaactggacaaaggg
ctggtggctgtaaaaacagtagtgcatggtcttgtggacttcatccagaaccatagcaag
aaggcaggagacccacagcaggctcctcagcacagcaagtacaagacatacatgtgtaga
gatatgaagcagaagggagggtgtcccagaggcgcaagctgcacctttgcccattcccag
gaggaactggaaaagttccgtaagatgaacaagcgtctgcctttgcgaaagcccctcagc
cagtcgctgacccagcttaacgacatggacatgggttgcaatccgggccttctgcctgat
gatggattggatctggcgcatctgacccacaaacctgccatggtcactaatggcattcta
tcagtgccacctggatcagagctcacacatctggtctcccgtggatcggcagcaccctac
gacacggctcgcaagctgggaaaactagacacaggcagcctcagtgctcctgaatcacct
ccagactccctggactccattcctaaagtgatgtcttcaacatctcatcctagagtcccg
agagagggtctgactgcacacacattgtctgctgtctccagagttccccagatgccacaa
taccctccacatcagcctgaggcctattactcagaatccagagtaccaccgtctggttca
caatacgattcctctcagtatccctctggcaactcctacgcttatcagcacttgcagcct
cgctacactcgccaaccagttgaccccggcttggcgccctacccagacccctatcctgtg
tcctatgccccggaacggcagtatcccgctcctccatctgaccctcgctatagctatcca
ccgcatcacgacagccgccgacatgcaccttatggaggccaccctcctctcacgtcatat
gctcgagacgagctgggccacaggagtcccgtccctatggagatgaccccaccaccacag
gcgccgacagcaggagcctcgtcctcctacctcccagaatcacgggacagatatggccct
gagagctacaaccactccggccacagcagaccttacagcggccggagcgcctatgcccgg
ccacagcccagcctggactaccttcaccgtcggaggaaggaaatcatggcccagcttgag
gagcggaaagtagtttctcctcctccctttgcctcctctccaaacctggctcattcttat
gaccccagttatacacaagaggccagggggcaaaatcattatatgggagaaaaccctccg
ccgtgccagaatgtcagacaaccggaatacgcggcgtcgtactcgccgtggtcatgtgac
acttttgtcccgtacatcggcaccaaggatatgaagtccaaagactgctcggccacaggc
tacatggagatgcaggccatagaaaaaagccggagagatccggctctggagttgcagcgt
cgagtggcagaggtcaaggatgatgacccgatcatcccttttggctcgctgcccaccgtc
tctcgctttggagccatatctcgcacgtccaaatcgggatatcagcctgctggccttgtt
ccaggccccccagccaaacactctgcaaatgcagttgattacagctatgggaatcacgga
ggatggagtgaaccctcttacacccagcaccaaaccatgccatctcagggacacttcagt
gaacgtctgccccctgctgcccaggacagggaacagctgaagatggagcttcatcaagtc
aaccaacagattacccaacagactcgctgtatggagagggaaccagtttcagcagctggc
caagcagctccagtggagtggtcaacggctagtgtttccagcgagcagctgagcctagag
ttgcaccaggtggagagagagatcggcatgaggacacgtgagatggccagggaggcggct
agcatgaagtacaagctggtagcaggaagtgagaacggacagagtgagcacaatatacag
cgggaagatcaccacctagccctcaatgagggatcaaacggttccagttctgtggtgcag
gattgtggtttgggcagctccagcatgtcctccctgaccagcaagacatcctcactcagc
ttgtcatctgaactggtgggcagcagcccggatctgaccaagaacggggtggctcatgca
tgctcatag
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integrated database retrieval system
