Ictalurus furcatus (blue catfish): 128613512
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Entry
128613512 CDS
T09387
Name
(RefSeq) collagen alpha-6(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04510
Focal adhesion
ifu04512
ECM-receptor interaction
ifu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128613512
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128613512
09142 Cell motility
04820 Cytoskeleton in muscle cells
128613512
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ifu04147
]
128613512
00536 Glycosaminoglycan binding proteins [BR:
ifu00536
]
128613512
Exosome [BR:
ifu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128613512
Glycosaminoglycan binding proteins [BR:
ifu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128613512
Hyaluronan
Extracellular matrix or blood plasma proteins
128613512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Radical_SAM
Motif
Other DBs
NCBI-GeneID:
128613512
NCBI-ProteinID:
XP_053490329
LinkDB
All DBs
Position
1:complement(25648371..25690295)
Genome browser
AA seq
2674 aa
AA seq
DB search
MGKLKGLLPLFILTSSYLLCSAQKTVCTQEALADIVFLADGSWSIDTENFQKMRDFLLTL
VNSFDVSPDKVQIGLVQNSNSPHTEFYLNSFETKQKLLDYITNLPYRGGGTKTGFGLNFL
LKQHFVKEAGSRAKDGVPQIAVVITDGQSQDNVEPHAQDLKHQGIILYAIGIKDADMEQL
KEIATKPHDQHIYSVSDFTALQGISQSFIQVLCTTFQEAKDQVSQVPKGCKANLADIVFL
LDSSSRNGDADFLVVKQFLHTFIEGLDVKPDKVRVGMVQFSNDPQQEFLLGEYADKNDLL
EKVDKLTYLTGGTETGKALRFILNNYFIESAGSRINQNVPQIAVVITDGDSNDDMEIAAM
ELRRKGVLIFAIGVGAASFTDLQSIANEPYHRFVLSFTEYEELLKATTNVVDKVCISVEA
QQEALAPKYADVFVLVDSTVEQTQNVTEFLNRLANQLNVASTSHRMALAQFGEEVSVEFR
FDAYETKTEALALIRKFQLRGTGQRKLGKAIDYVRTHLLNTEVGSRIAQGYKQYLLVVSR
GESDDNILTAVRALKDDGVMLINIDLSEELDFPFTAQSHPAPPRGAAPPDVSFSLVPPQW
LPTIVYSTTGNFKQISDNVMTIMDTRDEFMAAEDCKLVADIVFIVDVSDSTTSPGLVRDF
LYHIINALPIESDSVRVGIVLYRETPSADFYLNTFNKKSEILQYIKRLLFGGGESKTSRA
LKFAREKVFAKEMGSRRATGVQQIAVVITEVKFLDNVSSEEASKLLYSGVQVYALGVSND
NEEQLKQIASYPPTKFVFSLQSFSNLDKVEKIMQKTICHNMVHSAVLKSRKYDLKQGCLQ
TEKADIYFLIDDSSSIKNQFEEEKEFILDILSMFTIGPKQVRVGVVKFADEPTLEFRLNA
YNDKISLERAVKNIKHGAGDTYIGKALSNMTKYFEEAEKSQSTKVRKILIIITDGKSWDS
VNEPAAQLTAQGVSTYAIGVKDANETELLQITGDPEKTFFATNFHALRHLKDEIVTHICL
EEACKSMWADVIFLVEGSGSTAPEDFSKIKEFMNTAVSKFLIGKNSVQVGVVQFSSYSKA
EFALNKFSDKSQIQQAINEMQQQEQPIKNMKQLEEGTQTGAALNFVSAYFDPSEGGRSNA
PQFLIMITNGRSMDDIAQPVQALRNKSITIYSIGMGDFNSTQLKDISGTQEFVFLDRHDD
MLNFLDKVFLLKICKSADKCQKSQVADVVFLVDGSTSILPDNFKIMKSFMNSVVSTTQVG
QDNVRVCTIIYSTDVKVHFPLNQYYSKEEVQEAISALIYPTGDTYTAKALKYSLDYFDEA
RGGRSANGVPQLMFVITDGEATDAHYLEGAANKLHDYGVRIYGIGVADASIDELEKITKD
KNKVFHVNNFQALEDLWQNISREICKETKPECQKVAADLVILIDGSEKTQGALWNTMQNI
TLGLVDNLRIKQDLFRVGVAQFSTTYKKEFYLNEYYDEKDMKGAIKNMSPMVSKRNIGAA
LNGVQEFFKTDKGSRIEERISQNLLLITVGASSDEFTDAADGLRAMGIQMFAIGTTVKTE
TQLTSITGSRSRVFVLDSFDHRTLNHTTQMLINGICDSSRNDITSCMVNIGVGFDISHGS
SSPQSLFSSQKKLQAYLPEIIRYISTVHNLCCLPQQPVLQSNIGFRLVASDGKILYDTGF
EQYNEDIIKKVMALQMTQGVTFNTQLLRSFQDKFEGYRSGVKVVIIFTDGLDASVDDLMV
ASKNLRRSGIHALMPVALEGVKSITDLQKLQFGRGFDYREPLMIGMQNVASAMQKQIVAV
VSRECCNVMCKCTGHEGVRGPQGPPGTKGSLGQEGYLGFPGEEGQPGERGPPGLNGTQGH
QGCHGKRGLKGNIGYRGDIGEHGECGLDGVNGAQGVVGLAGAPGQQGGPGSPGKKGVRGI
PGVQGQKGLRGDPGETGIDNNFRGPKGEPGYPGLQGDTGTDGNPGRPGDAGNPGQKGRRG
IAGQPGASGPPGQRGLRGTSGASGPLGPVGPSGAPGLKGIAGFPGPQGPPGTQGNSGSKG
SVGPRGLKGQPGEPGNKGAVGPQGTRGPPGNDGPDGFGLPGPKGPKGDPGFPGYPGFQGE
PGEPGRNGTNGLNGIRGRGGNSGRQGAEGNPGDDGPAGHRGHKGPPGSRAMSTCQLINYV
RDNCVCCKDKAACPVYPTELVIGLDMSDDVTPALFGGMRSTLLSLLDSIDITESNCPTGT
RVAVVSYSSNTKYLIRFSDHRHKKDLVEAVKNIPLERTSNRRNIGAAMRFVGRNVFKRIR
QGVLIRKVAIFLSGGQSQDVTSITTAVLEYKALDINLGVIGFRDTPNVQRAFEADETGSF
ILSVLGKPDTQSAALEKIQRCVICFDPCNPARDCPSPGEVSIPKQVNVDLALLVDGSRSI
QADQYEGVKQVLGTVLDQLVVSRQPSKADRQARVALYQQSSSYREAQAPVKQIFTFQQFQ
DRNLMKQSIFENLQQTGGYSRLGHAMEFVIMHGLLTVSKPRKYKMVLLIVGGETEYSDRA
KLDFISMKAKCQGVVLFTLIVGDRFNSTQVEELATFPTEQHIVHLGNVKQGEPEYTRRFI
RTFLHILSRDMNTYPAPMLRKQCESLQQGHVLDVSEVTKRPPTERIPPPRIFYPENSGEE
YEEMEEETEYAEQTGTQMEYENLGLLTPGHEKSI
NT seq
8025 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaactaaaaggactgctacccctctttattttaacatcaagttaccttttgtgc
agtgcacaaaaaacagtatgcacacaggaagcattagctgatattgtcttcctggcggat
gggtcttggagtattgacacagaaaacttccagaagatgcgtgactttcttctcactttg
gtgaacagtttcgatgtgagtcctgacaaggttcaaatcggcttggtgcagaacagcaat
tcaccacatactgaattctaccttaacagctttgaaaccaagcaaaagcttcttgactac
atcacaaatctcccataccgaggaggtggcaccaagactggatttggtttaaacttcttg
ctgaagcagcactttgtgaaagaagcaggaagtcgtgctaaagatggggtgcctcaaatt
gccgtggttatcacagatggacagtcacaagacaatgtggaaccacatgcacaggacctg
aaacaccagggaatcatactttatgccattggtattaaagatgctgatatggagcagctg
aaggaaattgctactaagccacatgaccaacacatctacagtgtgtctgatttcacagct
ttgcaaggaatctcccagagtttcatccaggtgctttgtacaactttccaggaagccaaa
gatcaagtgtctcaggtgccaaaagggtgcaaggctaatttggctgacattgtgttcctt
ttggatagctctagtcgcaatggtgatgcagacttcctggttgtgaagcagtttcttcac
accttcatagagggtcttgatgttaagcctgataaagtcagagtaggaatggtacagttt
agtaatgatcctcaacaagaattcctgttgggggagtatgcagacaagaatgacctgctg
gagaaggtagacaaactcacctacctaacaggaggcactgaaaccggaaaagctcttcgc
tttatactaaataattacttcatagaatcagctggcagtcggatcaatcaaaatgtgcct
cagattgctgtggtgatcacagacggtgactccaatgatgacatggagattgcagccatg
gagctacggagaaagggggtgttaatctttgccattggggttggtgcagccagctttaca
gacctgcagtccattgctaatgaaccatatcaccgttttgtactgagtttcactgaatat
gaggagctgctgaaagcaaccaccaacgtagtagacaaagtatgtatttctgtcgaggcc
cagcaagaagctctagctccaaaatatgcagatgtgtttgtgttggtagacagcactgtt
gaacagacccaaaatgtgacagagttcctcaatcgcctagccaatcaacttaacgtggcg
agtacatctcatcggatggctttggctcagtttggtgaagaggtttcagtggaatttcgt
tttgatgcttacgaaactaaaactgaagcacttgcacttatccgcaaattccaactcaga
ggtactgggcagcgcaaacttggaaaggcgatagattatgtgcggactcacctcctcaac
actgaagtaggcagccgaattgctcagggctataagcagtacctgttggtggtaagcaga
ggagaatcggatgacaatatacttacagcagttcgtgcattaaaggatgatggtgtgatg
cttatcaacattgacctaagtgaagagctagactttccattcactgcacaaagtcaccct
gctccacctcgtggagctgctccacctgacgtatctttcagccttgttcctcctcagtgg
ttacctacaattgtctattctacaactggaaattttaaacaaatatcagacaatgtgatg
actatcatggatactagggatgagtttatggcagctgaggactgcaagttagtggctgat
attgtgtttattgtggatgtgtcggacagtactacaagtccaggcctggtccgtgatttc
ctctaccacattattaatgccttgccgatagaatctgacagtgtgcgtgtgggaattgtg
ttgtaccgtgaaacaccctcagctgatttttacttaaacacatttaataagaagtctgag
attttgcagtacattaaacgattgctgtttgggggtggagagtccaaaactagcagggct
ctgaagtttgcaagagagaaggtgtttgccaaagagatgggcagccgacgtgccacaggg
gtgcagcagattgctgtggtaataacagaggttaagttcctggataatgtctcatctgaa
gaagctagtaagttactatactctggagtccaggtctacgctcttggagtctcgaatgat
aatgaggagcagctgaaacagattgcatcttatcctccaacaaaatttgtgttcagtctc
cagagcttttctaatcttgataaagtggagaaaattatgcagaagactatttgtcacaat
atggtccattcagctgttttgaagtcaaggaaatatgatttaaagcaaggatgcttacaa
acagaaaaagcagacatctatttcctaattgacgactccagtagtattaaaaaccagttt
gaggaggaaaaagagttcattctagacattctgtcgatgtttactattggaccaaaacag
gttcgtgtgggtgtggtgaaatttgcagatgaacccacactagagtttagactgaatgca
tataatgacaaaatctctcttgaaagagctgtgaagaacattaaacatggtgctggagat
acatatataggaaaagccctgtctaacatgacaaaatactttgaggaggccgaaaagtca
caaagcactaaggttcgcaaaattctcatcattataactgatggaaaatcttgggatagt
gtgaacgaaccagcagcacagttaacagcacagggggtgtccacctatgctattggcgtg
aaagatgcaaacgagacagagctcctgcagataacaggtgacccagagaagacattcttt
gcaaccaactttcatgcactgagacacctgaaggatgaaattgtaactcatatttgctta
gaagaggcctgcaagagcatgtgggcagatgtcatctttttagttgaaggctcaggaagc
actgcccctgaggacttctcaaagataaaggaattcatgaatactgcagtgtccaagttt
ctaattggcaaaaatagtgtacaggttggagttgtgcagttcagctcatactcaaaggct
gaatttgccctcaacaagttttctgataaaagccagatccagcaggctattaatgaaatg
cagcagcaggagcagcccattaagaatatgaagcaactagaagaaggcactcagactggg
gctgcgctcaattttgtgtcagcgtactttgatccatcagaagggggtcgttccaatgcc
ccacagttcctcatcatgatcacgaatggcaggtcgatggatgacattgctcagcctgta
caagccctcagaaataagagcattacaatatactccataggaatgggtgattttaatagc
acacaactgaaagatatcagcggaactcaggaatttgtttttcttgacagacatgatgat
atgttgaatttcttagataaagtcttcttactcaagatctgcaaatctgctgacaaatgc
cagaaatcacaggtggcagatgttgtcttcttagtggatggttccaccagcattctacct
gacaactttaagattatgaagtccttcatgaactcagtagtgagcactacacaggttgga
caagacaatgtccgtgtttgcaccattatctattctactgatgttaaggtccatttcccc
cttaaccaatactacagcaaagaagaggtgcaggaagctatcagtgctctgatatatccc
actggagatacctacacagccaaggcactaaaatattcactggattactttgatgaagcc
agaggtgggagaagtgcaaatggtgtcccacagctcatgtttgtcattactgatggtgag
gctacagacgcacattatttagagggagctgcaaataagcttcacgattatggagttaga
atttatggtattggggtcgcagatgcaagtatagatgaattagagaaaattaccaaagac
aagaacaaggttttccatgttaacaacttccaagctttggaagacctttggcagaacatt
tctcgtgagatctgcaaggaaacaaaaccagagtgccagaaagtggcagctgatttggtc
attttgattgatggttctgaaaaaacccaaggagctctatggaacaccatgcaaaatatt
acactgggccttgtagacaatcttcgtatcaaacaagacctctttagagttggtgtagcc
caatttagtacaacatacaaaaaggaattttacttaaatgaatattacgatgaaaaggat
atgaagggggccattaagaatatgtccccaatggtatctaagagaaacattggagctgca
ctaaatggagtacaagagttctttaaaactgataaagggagccgcattgaagaaagaatt
tcacaaaacctgcttctgatcactgttggggcatcatctgatgagttcactgacgcagca
gatgggttaagagccatgggcattcagatgtttgcaattggaacaactgtgaaaactgaa
actcagctcactagcattactggttcacgtagtagggtttttgtactggacagctttgac
catcgcactctgaatcatacaacacagatgttgataaatggcatttgcgattccagccga
aatgacataacaagttgcatggtgaatattggagttggttttgatatatcccatggtagt
tcaagcccacagtcactctttagtagccaaaagaagctgcaggcctacctgcctgagatt
atcagatacatctccactgtgcacaacttgtgctgtctaccccagcagcctgttctgcaa
agcaacattggtttccgtttggttgctagtgatggcaagatactgtatgacacaggtttt
gagcaatacaatgaagacataataaagaaggtgatggcattgcagatgactcagggtgtc
accttcaatacccagcttttgcgctcttttcaggataagtttgaaggctatagatctggt
gtgaaggtagtgatcattttcactgatggcctggatgcatctgttgatgacctcatggtt
gcctcaaagaacctaagaagaagtggaatccatgcgctgatgccagtagctctagaagga
gtcaaaagcatcacagacctacagaagctgcagtttggacgaggatttgactacagagag
cctctcatgattggcatgcaaaatgtagccagtgccatgcagaagcagattgttgctgtg
gtctcacgagagtgctgtaatgtaatgtgtaaatgcactggtcatgaaggggtgcgagga
cctcaaggacctccggggacaaagggctctcttggacaggaaggatatcttggatttcct
ggagaagaaggacaacctggggagagagggccaccgggtctaaatggaacccagggacat
caaggctgccatgggaaaagaggtctaaagggtaacataggctacaggggtgatatagga
gaacatggagaatgtggtttggatggagtaaatggagcacagggagtagttggattagca
ggagccccaggacagcaagggggtccaggcagcccaggcaagaagggtgttagaggaata
ccaggagtccaaggacaaaaaggactgagaggagatccaggtgagacaggaattgacaac
aacttccgtggtcctaagggtgagcctggataccctggcctacagggtgacacaggtaca
gatggcaatccaggcaggcctggagatgctggtaatcctggtcagaaaggaagaagaggc
atagcgggtcaaccgggtgccagtggacctccaggacaaagaggactacgaggaacatct
ggagcttcaggaccactgggaccagtgggaccttctggtgctcccggactgaaagggata
gctggttttccaggacctcagggaccacctggcacacaaggaaacagtggatcaaaagga
agtgtaggacccagaggactaaagggtcagccaggggaacctggaaataaaggagcagtt
gggccacagggcaccagaggccctccgggaaatgatggtccagatggatttgggttacca
ggacctaaaggaccgaagggggatcctggttttccaggatatcctggatttcagggtgaa
cctggagaacctgggcgaaatggtactaatggccttaatggtataagaggaagaggggga
aattcaggcaggcagggagcagagggtaatcctggtgacgacggaccagctggacacagg
ggccataaaggaccaccaggaagcagagcaatgtctacttgtcaactgatcaactacgtt
cgagacaactgtgtctgctgtaaagataaagcagcttgccctgtctaccccactgaactg
gtgattggtttggacatgtctgatgatgtgactcctgcattatttggtggaatgcgctcg
actcttctttctctgctggacagcatcgatatcactgaaagcaactgtcccacagggaca
cgagtggctgtggtctcttacagttctaacaccaagtacctcatccgtttttctgaccat
cgtcataagaaggacttggtggaagctgtgaagaacatccctctggaacgtacatccaac
agacgcaacattggtgcagccatgcgctttgtgggcagaaatgtcttcaaacgtattcgt
cagggtgttctgatcaggaaggtggcgatcttcctctctggtggacagtcccaggatgtg
acatccataaccacggctgttctagaatacaaggctctggatataaaccttggtgttatt
ggttttagggatactcctaatgttcagcgtgcttttgaggctgatgagacaggaagcttt
attctgtctgtgctgggcaaaccagatacccagagtgcagcacttgaaaagatccagcga
tgtgtgatttgctttgatccttgcaatccagctagagattgtcccagccccggtgaggtg
tccattccaaagcaggtaaatgtggacctggcgttgctggtggatggttcccgcagcatc
caggcagatcagtatgagggagtgaagcaggtgttgggcactgtgttggaccagcttgta
gtgagtcgtcagcccagcaaagctgacagacaggcacgggtggcgctttaccagcagagt
tcatcatacagagaggcccaggctccagtcaagcagatcttcactttccagcagttccaa
gaccgcaacctgatgaagcagagcatcttcgaaaatctacagcagactggtggatactcc
agactgggtcatgccatggaattcgtaatcatgcatggtcttctcactgtttccaagcct
cgaaaatacaagatggtgctgcttatagttggaggagagaccgaatattctgatagagca
aaactggactttatctccatgaaagcaaagtgtcagggtgtggtgcttttcactcttata
gtcggggatcgttttaacagcactcaggtggaggagcttgccacctttcccacagagcag
cacatagttcacttgggcaatgtaaagcaaggagaaccggagtacactcggcgcttcata
aggactttcctacacattctgagccgggatatgaacacctaccctgctccgatgctaaga
aaacaatgtgagagtcttcagcaaggtcatgtccttgatgtctctgaggttactaagagg
ccacccactgaaaggatccctcccccaagaatattttaccctgagaattcaggggaagaa
tatgaggagatggaagaagagacagaatatgctgaacagacagggacacagatggagtat
gaaaatttgggcctgctgactccaggacatgaaaagtctatctga
DBGET
integrated database retrieval system
