Ictalurus furcatus (blue catfish): 128613562
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Entry
128613562 CDS
T09387
Symbol
col6a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04510
Focal adhesion
ifu04512
ECM-receptor interaction
ifu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128613562 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128613562 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128613562 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ifu04147
]
128613562 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
ifu00536
]
128613562 (col6a1)
Exosome [BR:
ifu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128613562 (col6a1)
Glycosaminoglycan binding proteins [BR:
ifu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128613562 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
128613562 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
GCS2
Motif
Other DBs
NCBI-GeneID:
128613562
NCBI-ProteinID:
XP_053490422
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All DBs
Position
10:complement(8772925..8807607)
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AA seq
1011 aa
AA seq
DB search
MAQNGFLLTALLFCSAWAGLLAQDKTKFRECPVDLFFVLDTSESVALRGVAHYYFNKIKA
FATRFIDELKDFRQPCDRYLSWNSGALHYSDEVELVKGLTEMSPGGRSALKKAIDSIKYI
GKGTYTDCAIKQGIAELLIGGSYYNENKYIVVVTDGHPVSGYKEPCGGIQEAANEARQHG
IKVFSVAISPDQEESRLSVIATDPRYRQNFTAVDSTSSTQMNTIHTIIDMITNETKDVCC
SFDCTAPSGNPGPPGLPGNRGEPGRQGLPGEKGEAGQPGRPGDPGPLGYQGMKGDQGERG
YKGERGHKGFKGDKGQPGRDGTDGRKGEPGFDGLPGCKGSPGQDGLQGEPGPKGDPGPYG
QKGANGESGADGGAGRPGNYGDTGDKGDRGPRGANGDKGERGDDGAQGPDGPRGERGIAG
EKGEQGSRGNRGPRGEPGEPGPRGETGREGSSGPNGDPGETGKPGPPGYRGDEGPTGQEG
SKGPRGIKGAPGDRGLIGERGVDGPPGNGTEGCHGFQGYHGPRGDPGEPGSRGTPGPKGD
DGEPGEPGSDNTDPGEPGPKGPKGHRGPEGLPGPPGPPGPPGVDDCEILDIIMRMCSCCE
CKCGPLDITFIVDSSESIGANNFAIAKDFIIAVIDRLIRDQQVKFGLSESRIGVVQYSGE
KAQEVVKLGDPDIRNITALKRAVRELRWLAEATYTGEALEYSWDKMIHRLGADHSNSVVL
VLTDGRSDTKRDKVPLNTLCGRGLQVVGVGVIDYSGRQPSSDQVEDVSCSSDPSKPGASF
VLNNFGMLLDDTFLQNLTDTMCQDKKCPKYTCPISFKNSTDILIMMDSSASVGAKNFELT
QNFTEKLVKRFLSAEKGRNVQVRVAVGQYSDTAKLEAGFSTNYTVVAAQLAEAKFQNAGT
QVTGALSFAVNQFRGGRNRKKKLLLFSDGRSQGLSTRQLEEAVAEINTQGIELYVLAVEN
QLNQHNLHILASRGRLDDNIYAARHLIRAPDYRSLLRGVFFQTVSRKISLD
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaaatgggtttcttttaacggcacttctcttttgctcggcgtgggcaggactt
ttggctcaggacaaaactaagttcagagaatgccctgtggacctgttctttgtgctggac
acatcggagagcgtggcccttcgaggcgtcgcacactattatttcaacaagatcaaagcc
ttcgctacacgcttcatcgatgaactgaaggattttcgccaaccatgtgatcgatatcta
tcctggaattctggagcgttgcactacagtgatgaggtcgagctggtgaaaggcctgacg
gaaatgagtccgggaggtcgcagcgcacttaaaaaagccatagattccattaaatatatc
ggcaagggaacatacacggactgtgccattaagcagggtattgcagagctgctcataggt
ggctcttactataatgagaataaatacattgtggttgtgacggacggtcacccagtcagt
ggttataaagagccctgtggagggattcaagaggcagcaaacgaggccaggcagcatggc
atcaaagtgttttctgtggccatctccccagaccaggaggagtcaagattgtccgtcatt
gccacagacccgaggtacaggcagaacttcaccgctgtggacagcaccagttccacacag
atgaacacaatccacaccatcatcgacatgatcaccaatgaaacaaaggatgtgtgttgc
tcctttgactgcactgcaccgagtggtaaccctggcccacctggtcttcctgggaacaga
ggggagcctggaagacaagggctgccaggagagaaaggagaagctgggcaaccgggacgt
cctggtgatcctggtccacttggttatcaaggcatgaagggagaccaaggagaaagagga
tacaagggagaaagaggccacaagggcttcaagggtgacaaaggacagcctggaagagat
ggaactgatgggcgtaagggtgagccagggtttgatggtctaccaggttgcaaagggtca
cccgggcaggatggtttgcaaggggagccaggcccgaaaggagaccctggtccttatgga
caaaaaggagcaaacggagagtctggtgcagatggtggagcagggagacctggtaactat
ggagacactggagacaagggtgacagaggaccaagaggagctaatggggataaaggagaa
agaggagatgatggggcacaaggaccagatggcccaagaggcgaaagaggtatagcaggc
gagaaaggtgaacaaggctcccgtgggaacagaggacccagaggagaacctggtgagcca
ggtcctcggggcgagacaggacgtgagggatcatctggacctaatggtgacccaggtgag
acaggaaagcctgggcctccaggttaccgtggagatgagggtcccacaggtcaagagggt
agtaaaggacccagaggaatcaaaggtgccccaggagacagaggccttattggagagagg
ggagtagatggaccaccaggaaatggaacagagggttgccatggtttccagggttatcat
ggtcccaggggagatcctggagagcctggaagcagaggaacaccagggcccaaaggggat
gacggggaacccggtgaacctggttcagataacactgatccaggagagcctgggccaaaa
ggaccaaaaggacatagaggtcctgaaggattacctggacctcctggacctcctgggccc
cctggagttgatgactgtgagatcctggatatcatcatgaggatgtgctcttgttgtgag
tgcaagtgtggacccctggacattacctttattgtggacagctctgagagtatcggagct
aacaactttgcaatcgctaaggacttcatcatagctgtcattgacagactgatcagagat
cagcaagtcaaatttggcttgagcgagtctcggattggtgtggttcagtacagtggagaa
aaggctcaagaggttgtgaagcttggtgaccccgacatccggaacataacagcgctcaag
agggctgttagagagttgcgttggctggctgaagccacctacaccggagaagccctcgag
tattcatgggataagatgatccatcggctgggagcagaccattcaaacagtgtcgtgctg
gtcctgactgatggtcgttcggacactaagagagacaaggtgcctctaaatacactgtgt
ggccgaggcctacaggttgttggtgtaggtgttatagactattctggtagacagcccagc
agtgatcaggtggaagacgtgagctgttcaagtgatccgagtaaaccaggtgcctcgttt
gtccttaacaacttcggcatgctcctggatgatactttcctccaaaacttgaccgacaca
atgtgtcaagacaagaaatgcccaaagtacacttgtccaatttcctttaagaattccaca
gatattctgattatgatggatagctcagctagcgtcggtgccaaaaactttgagttgacc
caaaacttcacagagaagctggtaaagcgcttcctgtcagcagagaaaggaagaaacgtt
caggtccgtgttgccgttgggcagtacagtgacaccgctaagctagaagctggcttttct
accaattacactgtagtggctgctcagctcgcagaggccaagttccagaatgctggcacg
caagtgaccggggctctcagtttcgccgttaaccaattcaggggaggccggaacaggaag
aagaagctgctgctgttttcagatgggcgctcacaaggcttgagcactaggcaattagaa
gaggcggtagcggaaattaacacacaaggcattgagctttatgttctggctgttgagaat
cagctgaatcaacataacctgcatatcttggcaagccgtggacggctcgatgacaacatc
tatgctgcccgccatctaattagggctcctgactatcgctccttgcttagaggagtcttt
ttccaaactgtgtcccggaagatttcactggattga
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