Ictalurus furcatus (blue catfish): 128614616
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Entry
128614616 CDS
T09387
Symbol
ddx27
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ifu03041
]
128614616 (ddx27)
03009 Ribosome biogenesis [BR:
ifu03009
]
128614616 (ddx27)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
128614616 (ddx27)
Spliceosome [BR:
ifu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128614616 (ddx27)
Ribosome biogenesis [BR:
ifu03009
]
Eukaryotic type
Pre-60S particles
Helicases
128614616 (ddx27)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
PRK
Motif
Other DBs
NCBI-GeneID:
128614616
NCBI-ProteinID:
XP_053492059
LinkDB
All DBs
Position
11:complement(19025808..19043128)
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AA seq
778 aa
AA seq
DB search
MLSEFDLIGTIDDNIDVPEDEESGSDDEEQPIVLSKEKKALKGRSNGDFNADFEFGEKDG
LYSEDLAMAEVMSQLKKRKAPTTLDEKIEKVRKKRKMEEKAEKGGSKSDTSVTKEEEDDA
DDNDDDDGDDDDDNGDKELEDQTNEDVGSSDDDDDDDDEFNSGDEEVLKKADTLREKGKK
GKRKAAEEPEAFFEDASQYDENLTFQDMNLSRPLLKAITTMGFKQPTPIQKACVPVGLLG
KDICACAATGTGKTAAFMLPVLERLLYKPRVMQVTRVLVLVPTRELGIQVHSVARQLGQF
TNITTCLAVGGLDLKSQEAALRLGPDVLIATPGRLIDHLHNTPSFELSQIEVLILDEADR
MLDEYFEEQMKEIIRLCSYQRQTMLFSATMSEEVIDLASVSLKQPVRIFVNSNTDVAPYL
RQEFVRIRPAREGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHG
NLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTAKHYVHRVGRTA
RAGKVGRSVSLVGESERKMLKEIVKKAKAPVKARIIPQEVILKFRDLIEKLEKDVYAVLR
LEKEEKEMVHSEAQINAAQKRLTQKSDEKPPARSWFQTHDERKKERMSKALQDFDLALRG
KKKRAQFLKEGKKKVLSAEERAQFEMLKSQMYAERAAKRDRKPKRARVVPEDEPKNTASK
QKGGKPTKKSVFDKELTNVNKKVLKQYRSGPSFEDRKRLGIAHKKGGRFKSKAKFRRK
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgttgtcggagtttgatctgatcggcaccattgacgacaacatagacgtaccagaagac
gaggagtcgggctctgatgacgaggagcagcccatcgtgttgagtaaggagaagaaggcg
ctgaaaggacgaagcaacggcgacttcaacgctgactttgagttcggagagaaagatgga
ctgtacagtgaggacttggccatggcagaagttatgagccaacttaaaaaacgaaaagca
cccaccacgttggatgagaagatagaaaaagtgcgtaagaagcgcaaaatggaggagaaa
gcagagaaaggaggcagcaaaagtgatacttcagtcaccaaggaggaggaggatgatgct
gacgacaacgatgatgacgatggtgatgacgacgacgacaacggagataaagagcttgag
gaccagacaaatgaagatgttgggagtagtgatgatgatgatgatgatgatgatgagttt
aattcaggggatgaagaagtcctcaaaaaagcagatactctaagagaaaagggcaagaaa
ggaaaaaggaaggcagcggaagagcctgaagccttctttgaagacgcctcacagtacgat
gaaaacctaacattccaggacatgaatctgtcaagacctctgctgaaggccatcactacc
atgggcttcaagcagcctacaccaatccagaaggcatgtgttccagtgggtttactgggg
aaggatatctgtgcttgtgctgctactggaactggtaagactgcagcattcatgttgcct
gtactggagcgtctcctttacaagccgagagtaatgcaggtaacgcgtgtgcttgtgctc
gtgcccaccagagagctgggcatccaagtgcactctgtagcacgccagcttggccagttc
accaacatcaccacctgcctggctgtaggtggcttggacctgaagtctcaagaggcagcg
ctgaggttggggcctgacgtcctgattgccacacccggccgcttgatagatcacttacac
aacactccatcttttgagcttagtcaaatcgaggtgcttattctggacgaagctgaccgg
atgttggatgaatattttgaagagcagatgaaggagattatccggctgtgctcttatcag
agacagactatgctgttctctgctaccatgagtgaagaggtaatagatctcgcctccgtg
tcactgaagcagccagtgagaatctttgtgaacagtaacacagatgtggctccatacctc
agacaagaatttgtaaggattcgaccagccagagaaggtgaccgagaggccatagttgca
gcgctcctcacgcgcacttttcaggaccatgtgatgttgttcacccagaccaagaaacag
gcccaccgcatgcacatcctcctcggcctcatgggtttaaaagtcggagagctccatggc
aacctgtctcagacgcaaagattggagagtctcaggcgatttaaagatgagcagattgac
atcctggtggccacagatgtagcagccagaggcctggatattgagggagtcaaaacagtt
ataaacttcaccatgccaaacacagcgaagcattatgtgcacagagtgggccgcacagct
cgagcaggaaaagtaggtcgttctgtgtcgctggtgggggaaagcgagaggaagatgctg
aaagagattgtcaaaaaagccaaagctcctgttaaagctcgcattattcctcaagaggtg
attctgaagttcagagatctgattgagaagttggagaaggatgtatatgctgtcttgcgt
ttggagaaagaagagaaagagatggtgcactcagaagcacagattaatgcagctcagaag
aggctaacacagaaatcagatgagaaaccgccagcaaggtcttggttccaaacccatgat
gagaggaagaaggaacgaatgagcaaagcacttcaggactttgacttggccctaaggggg
aagaagaagcgtgctcaattcttgaaagagggcaagaaaaaagtgctgtcggctgaagaa
agagctcagtttgaaatgctcaagtctcagatgtatgccgagcgggccgcaaaacgtgac
cgcaagcccaaacgagccagggttgtgccagaagacgagcccaaaaacacagcctcaaaa
caaaaaggtggaaaacctacgaagaagtccgtgtttgacaaagagctcaccaatgtcaac
aagaaagtcctgaaacagtacagatctgggccttcctttgaggacagaaaaagacttggg
attgcccataagaaaggaggacgcttcaaatccaaagccaagttcaggaggaagtga
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