Ictalurus furcatus (blue catfish): 128614773
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Entry
128614773 CDS
T09387
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128614773 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128614773 (smarcc2)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128614773 (smarcc2)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128614773 (smarcc2)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128614773 (smarcc2)
PBAF complex
128614773 (smarcc2)
GBAF(ncBAF) complex
128614773 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
128614773
NCBI-ProteinID:
XP_053492347
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All DBs
Position
11:complement(156715..187184)
Genome browser
AA seq
1080 aa
AA seq
DB search
MLAQTQPDRTEPQNPNLSQNGRRFSRQLKEIPQLCSRGRSVSHVWLETKMAVRKKDGGPN
VKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQEEVFGRHVSNP
PLTKLPMKSFVDFKAGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRNVEMFMTIEKSL
VQNNCLTRPVIYLSSEIEPKLLGKLKDIIKRHQGSVTDDKQASSHVVVPIPASLEEEEWV
RPVMKRDKQMLLHWGYWPDSYDTWISASEVEAVVEDPPSAEKPRKVHAKWILDLDQYNEW
MNEEDYEVGEGGTRRKRISAKTLTDEVSAPDERRDKKPANAKKRKRSPSPSPTPPPQESK
KKNTKKGPTTPYNKSKRGQREEEQEDLTKDLDEPSPVPAAEESLNKTVTKKDSDSTPVKG
GTDGDEQEDEAMETVGKEEDEGSASVKGEPVKGSDLHEDNVTEQTHHIIIPSYAAWFDYN
SVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCA
IMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVPLQPKASQTPSSQP
ILSFPDKVKEKPTDLQNFGLRTDMYSKKSGPSKGKNAASATREWTEQETLLLLEGLEMYK
DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEEGATALGPLAYQPVPFSQAGNPVMSTV
AFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAARVSGRPDPLYGLEG
SGIAGTGLEDSDKPEESSDESKSSDAQNTEDKRDNSKESKDGVSEEEEKQGENGKKEEEG
GKEGETEREAEKTDSDTGDVEKEKEGKEGSEDGQREGESDGERKAKVERDVGEGNLATAA
ASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEY
QRQQLLADRQAFHMEQLKYAEMRARQQHFQQIQHQHHSNQPGNQPGNAPPIPHQSAPNVN
APPPAPSLTPAAANTPSEAPPTSTSHGSSPNNIQPGAVHDSGTALTGDSLHPSGPVTPAQ
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgttggctcaaacacagccagacagaacggaacctcaaaatccaaatttgagccaaaat
ggacgccgtttctcgcgtcagctgaaggaaataccgcagttgtgcagcagagggcgctcc
gtctcacacgtctggctggagacaaagatggcggtgcggaagaaagacggcgggccgaat
gtgaaatatttcgaagcctctgataccgtgtctcagttcgacaatgtccgcgtgtggctc
gggaagaattataaaaagtatatccaggcggagcctcccactaataaatctctgtccagt
ttggtggttcagctgctgcagtttcaggaggaagttttcgggcgacacgtcagcaatcct
cctctcaccaaactaccgatgaagagttttgtggactttaaggcgggaggagcgctgtgt
cacattcttgctgctgcttacaagttcaagagtgaccaaggatggaggaggtttgatttc
cagaatccttctagaatggaccggaacgtggagatgtttatgaccatagagaagtctctg
gtacagaataactgtctgactcggccggtgatctacctgagctcagagatcgaacccaaa
cttctgggaaaactgaaggatatcattaaaagacaccagggctcagtaactgatgataaa
caggccagttctcatgtggtggttccgattcccgccagtctggaggaggaggagtgggtc
cgacctgtgatgaagagagataaacagatgctgctgcactggggttactggcctgacagt
tacgatacctggatctcagccagtgaagtggaggccgtagtggaggatccacccagcgca
gagaaacccagaaaggttcatgctaagtggatcctggatctggatcagtataacgagtgg
atgaatgaggaagactacgaggtgggtgaaggaggcacgaggaggaaaaggatctcagct
aagactctgacggatgaagtgagcgctccagatgagaggagagataaaaaacccgccaac
gccaagaaacgcaaacgctccccctctccatccccgactccgccccctcaggagagcaag
aagaagaacaccaagaaagggcccactaccccttacaataagtcaaagcgaggtcagagg
gaggaggagcaggaggacttgaccaaagacctggacgagccgtcacctgtacctgcagca
gaggagtccctcaataaaacagtgactaaaaaggactcagactcgactccggtgaagggg
gggactgatggagatgaacaggaggatgaggcgatggagacggtgggaaaggaggaggat
gaaggttctgccagtgtgaaaggagaaccggtgaaaggttctgatctgcatgaggataac
gtgactgaacagacgcaccacatcatcattcccagctacgctgcctggttcgactacaac
agtgttcatgctatcgagcgtagagctctgcccgagttcttcaatggaaagaacaaatct
aagacccctgagatttatcttgcctacaggaactttatgatagatacatatcggctgaac
ccacaggagtatttgacctctacagcttgccgtagaaacctggcaggagatgtttgtgcc
atcatgagggtccatgcatttctggaacagtggggtttgattaattatcaggtggattct
gagagccgtcccacccccatggggccaccgcccacatctcacttccacgtcctggcagac
acgccatccagtctcgtacccctgcagccgaaagcctctcagactccgtcctcacagccg
atactgtcgttcccggacaaagtgaaggaaaaaccgacggatctgcagaactttgggctg
aggacggacatgtacagcaagaagagcggcccgtctaagggtaaaaacgctgccagtgca
acacgggagtggactgaacaggaaactttgttactgttggagggtttggagatgtataag
gacgactggaacaaggtgtcggagcacgtgggcagccggacgcaggacgagtgtatcctg
cacttcctgcggttgcccatcgaggacccgtacttggaggagggggcgacggctctgggt
ccgttggcgtatcagcccgtccccttcagccaggccgggaatccggtcatgagcaccgtg
gccttcctggcttccgtggtcgacccgcgcgtggcctcggctgcagccaagtctgctcta
gaggagttctcccgaatgaaggaggaggtaccagcggctttggtggaggctcacgtgcgg
cgtgtggaggaagcggcccgggtgagcggcagaccagatccactgtacggcttggagggc
agcggcatcgccggaaccggcctggaggacagtgataagcctgaggagagcagtgacgaa
agcaagagcagtgacgctcaaaacacagaggacaagagagacaacagcaaggagagtaaa
gatggagtgagtgaggaggaggagaagcagggtgagaacgggaagaaagaagaagaagga
ggtaaagaaggagagacagaacgagaagcagagaagacagactcggacacaggtgatgta
gagaaggagaaagaaggaaaagagggatcagaggatggacaaagggaaggagagagtgat
ggagagaggaaagcgaaggtggagagagatgttggtgaggggaatctggccactgcagct
gcctctgcgctcgctgctgctgctgttaaagccaagcacctggctgcggtggaggagagg
aagatcaagtctctagtggctctgctggtggagactcagatgaagaagctggagatcaaa
ctgaggcactttgaggagctggagaccatcatggaccgagagagagaggcgttggagtat
cagaggcagcagctcctggctgatcgtcaggcgttccacatggagcagttgaagtatgcg
gagatgagagcacgccagcagcacttccagcagatacaacaccagcaccatagcaaccaa
cccggcaaccagcccggcaacgccccgcccatcccccaccaatcggctcctaacgtcaac
gccccgcctcctgcacccagcctcaccccggctgccgccaacacccccagtgaagctccg
cccacttctacatctcatggctcctcccccaacaacatacagcctggagccgtgcacgac
tccggcactgcactaacaggagattcccttcatccctccggcccagtcacccctgcacag
tga
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integrated database retrieval system
