KEGG   Ictalurus furcatus (blue catfish): 128614939
Entry
128614939         CDS       T09387                                 
Symbol
smx5
Name
(RefSeq) smx5 isoform X1
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
ifu  Ictalurus furcatus (blue catfish)
Pathway
ifu03018  RNA degradation
ifu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ifu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    128614939 (smx5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    128614939 (smx5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ifu03019]
    128614939 (smx5)
   03041 Spliceosome [BR:ifu03041]
    128614939 (smx5)
Messenger RNA biogenesis [BR:ifu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     128614939 (smx5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     128614939 (smx5)
Spliceosome [BR:ifu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    128614939 (smx5)
 Complex C
  U2 snRNP components
    128614939 (smx5)
SSDB
Motif
Pfam: LSM SM-ATX DltX DYW_deaminase
Other DBs
NCBI-GeneID: 128614939
NCBI-ProteinID: XP_053492645
LinkDB
Position
11:complement(11343812..11346610)
AA seq 116 aa
MNTVTHIYYHTIFYAVIIIILQLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIK
LTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq 351 nt   +upstreamnt  +downstreamnt
atgaatactgttactcatatctattatcatacaatattttatgctgttattataattatt
ctacagcttttctactcgttcttcaagtccttggtgggtaaagatgtggtggtggagtta
aaaaatgacttgagcatatgtggaaccctacattcagtagatcagtatctgaacatcaaa
ctcacagatatcagtgtcaccgaccctgaaaagtatcctcacatgttgtcagtgaagaac
tgcttcatccggggatcagtggtgcggtacgttcagctcccggccgatgaggtggacaca
cagctactacaggatgcagcacgcaaagaagccatgcaacagaaacaatga

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