Ictalurus furcatus (blue catfish): 128615382
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Entry
128615382 CDS
T09387
Symbol
skic2
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128615382 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128615382 (skic2)
Enzymes [BR:
ifu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128615382 (skic2)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
128615382 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
128615382 (skic2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
HTH_23
DUF3516
NirdL-like_HTH
Motif
Other DBs
NCBI-GeneID:
128615382
NCBI-ProteinID:
XP_053493399
LinkDB
All DBs
Position
12:23117068..23141742
Genome browser
AA seq
1249 aa
AA seq
DB search
MEKIDLPAPGPDDLPLALLEMGCSGKFELLTHPQPRHTPFPAQSTLPHGLPPFSLDLKME
VEKRFLRDPAWMPIHDTTDAFQKFLKLTKKDRQVDSLLQCSLSPLHSGLSVVRDPTTGML
LDFTEVLLEHTGLSAKNSLSMQRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKEKSEL
EEDIDFENDLLTVPPGLKTGMNFSNKEAKTTKGDVNLLSLLSTFDDIIEPVPEEKERGSG
SGEESKLHRTNSLEDLGIKDTLPAPAPAAASSPSKTDGGIQKSREEKKERKWAVPVDIKS
PCEDFYKRIPNPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQK
HMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEASCLIMTTEILRSMLYNGS
EVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVGIILLSATVPNAVEFSEWIGRIK
KRPIYVVSTVKRPVPLEHFLYTGNSTKTQKELFLLLDATGAFLTKGYYAAVEAKKERTSK
HAQSFGTKKASQNTTPNQDRAIWQTLLNFLSERQQTPVVAFTFSRTRCDDNARSLTSLDL
TSSVEKNEIHSFFHKSLSRLRGGDRQLPQVLLMRDLLKRGVAVHHSGILPILKEVIEMLF
SRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLHPGEYIQMAGRAGRRGLDA
TGTVIILCKTGVHEMADLHTMMLGKPTLLQSQFRLTYTMILNLLRVEALRVTDMMRRSFS
ENHRDTQTNERRISELKSELSSLPPLDTEGQLSDLLSYYHTLTELRITTEALQQAVMESV
NGMKALSVGRVVVVNNAQHFNALAVLLQVSTDSVNRTFTALIICEKGNEEAAGPVQNNRV
FTHLHDTSLFTPEGPCSHTVQKLRPQDISAITVKTLKVIPERIIDNYNKRQQPRFRLDPP
GQAISTATQELLRLAEANQNGIATLDPVNDLHLKGVDVVEGVMRQRVLQDSLKDFHCTHS
PTFTEQFARVQERMKLQEELDKLLYLISDQSLTLLPEYHQRIKVLEALNYIDGSGAVQLK
GRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLVFTQNTQIEPHIPNTIQEAIDR
VLGVAQRIGELQRDCGLAQTTEDFVSQLKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVV
RCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatagacttgccagcccctggtcctgatgatcttcccctggccctgctggag
atgggctgttcagggaagtttgagctcctcacacacccacagcccagacacacacccttc
cctgcacagagcacgcttcctcatgggcttcctccattcagtctggacctgaagatggag
gtagagaaacgtttcctgcgggatcccgcgtggatgcccatacatgatacaacagacgcc
ttccagaagtttcttaaactgactaaaaaggacagacaagtggactcactgttgcagtgt
tcgctgtctcctctgcactcgggcctgtctgtagtgagagatcccaccactggcatgctg
ttggatttcacagaggtgttactggagcacaccggcttgtcggcgaagaactctttatcc
atgcaacggcagcctggacctccatctgagagcctgagaggcagcaacaccaactacccc
ttcctaccaggtggtatggaggagctgacgttagagcagataaaggaaaagtccgagttg
gaggaggacattgactttgagaatgatttactgacggtgcctccggggctgaaaaccggc
atgaacttcagtaacaaagaagccaaaactacgaaaggagacgtgaacctgctgtccctg
ctatctacgtttgatgatataatcgaacctgtgcctgaggagaaagagagaggctcagga
agtggagaggagtccaaactccacagaacgaacagcctcgaggatctgggcattaaggac
acgctgccggctcctgctcccgctgcagcttcgtcaccgagcaagacagatggaggaata
cagaaaagcagggaagagaagaaggaaaggaagtgggctgtgcccgtggacatcaaatct
ccgtgtgaggatttctacaaacggatccccaatcctgcttttaagtatccgtttgagctg
gacgtgtttcagaagcaggctatcctcaggctcgaggctcacgactcggtctttgtggct
gctcacacctcggcgggcaagactgtggtggccgagtacgccatagcgctctcgcaaaaa
cacatgaccagaaccatctacacgtcccccattaaagctttgtccaatcagaaattccgc
gactttaagaacacgtttggtgacgtcgggcttttgactggagatgttcagctaaaccct
gaggcctcctgtctcatcatgaccactgaaatattgaggtctatgttgtataacggatca
gaggtcattcgcgacctggagtgggtaatattcgacgaggttcattacatcaatgatgcg
gagcggggggttgtgtgggaggaagtgctcatcatgctgcctgaacatgttggcattatt
ttgctcagtgctacagtgcccaatgcagtggagttcagcgaatggatcgggcgtatcaag
aagaggccgatctacgtggtcagtacggtgaagaggccggtgccactggagcacttcctc
tacacaggaaacagcaccaagacccagaaagagctcttcctcctgctggatgctactgga
gctttcctcaccaaagggtactacgcggctgtggaggccaaaaaggagcgcaccagtaaa
catgcccagtcttttggtacgaagaaggcatcacagaacaccacaccaaatcaggaccgg
gccatatggcagacgctgctcaacttcctgtcagagaggcagcagactccggtggtggcg
ttcaccttctcgcgcacacgctgtgacgacaacgctcgctcgctcacctctctggacctg
accagctcggtggagaagaacgagatccactccttcttccataagagtctgagcaggctg
agaggaggagaccgacagctccctcaggtcctgctgatgagggacttgctgaagagaggc
gttgccgtgcaccacagcggcatcctgccgatcctgaaggaggtcatcgaaatgcttttc
tctagaggccttgtaaaagttctattcgccaccgaaacgtttgcgatgggtgtgaacatg
ccggccaggaccgtggtgttcgacagcatccgcaaacacgatggaactggattcagaaac
cttcatcctggtgagtacatacagatggcggggagagcaggcagaagaggcctggatgct
acaggcacggtcatcatcctctgcaagactggagttcacgaaatggcggacctgcacacc
atgatgctgggaaagccgacgttgctgcagtcccagttcaggctgacttacaccatgatc
ctcaacctgctgcgagtcgaggccctccgagtcaccgacatgatgcgcaggagcttctcg
gagaaccacagggacacgcagactaatgagaggaggatatccgagttgaaaagtgagctt
tcctctctcccacctcttgacacagagggtcagttatctgatctgctctcatattaccac
actttgacagagctacgcattacaacagaagccctgcagcaagcagtgatggagtcggtg
aacggaatgaaggccttgtcagtgggacgggtcgtcgtggtcaacaacgctcagcacttc
aacgccctggctgtcctcttacaggtgtccactgactcggtgaatcggacattcactgcc
ctcatcatttgtgagaaaggcaacgaagaagcagcaggacccgttcagaacaaccgggtg
ttcacacaccttcacgacaccagccttttcaccccagagggtccctgcagtcacacggtg
cagaagctgaggccgcaggacatttctgcaatcacagttaagaccctgaaagtcatccca
gagaggattatcgataactataacaagagacagcagccccgcttcagactggatccacct
ggtcaagccatttccactgcaactcaggagctcctgcgattggccgaggccaaccagaac
ggcatcgcgaccctcgaccccgtgaatgacctccacctgaagggtgtggatgtggtggag
ggtgtgatgaggcagcgagtccttcaggacagcctcaaagacttccactgcacccactca
cccaccttcactgagcagtttgcacgtgtgcaggagcggatgaaactgcaggaagagctg
gacaaactgctgtacttgatctcggatcagtcactgactctgctgcctgagtaccaccag
aggattaaggtcctggaggctctgaactacatcgacggtagcggagcggtgcagctgaag
ggtcgagtggcatgtcagatcagcagtcatgagctccttctcacagagctgctgtttgag
aacacgctgagtcctctggccccggaggagagcgccgccctgctgtcctgcctcgtgttc
acacagaacactcagatagaaccgcacatccccaacacaatccaagaggcgatcgatcgg
gtgctgggcgtggctcagcgtatcggggagctacagcgcgactgcggcctcgctcagacc
accgaagacttcgtgtcccagcttaagtttggcctgactgaggtggtgtactgctgggcc
agaggaatgccctttgcggagatcgcccagctgacagacgtgcaggaagggacggtggtg
cgctgcattcagagactggacgaagtcctgaaggaggttagacaagcggcccgaatcgta
ggtgattcggttttgggcagcaagatggagagagcatcgctggccattcgcagagacatt
gtcttcacggcgtctctttacacgcactga
DBGET
integrated database retrieval system
